PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00107.1.g00160.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 656aa    MW: 72485.1 Da    PI: 7.8548
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00107.1.g00160.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1447.6e-14150229190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 
                                     ++Yn ++ e GF +r s+s+++ r++ + ++++vC  +g +  + +          + r+gCk ++++++++d+ w++ 
  Zjn_sc00107.1.g00160.1.sm.mkhc 150 NYYNLHSWEKGFGIRCSSSETN-RQQYVNMKELVCMYQGWPGANIRG---------SMRCGCKSRMVLRRTDDHGWYIR 218
                                     69****************9998.6666*************9998766.........99********************* PP

                            FAR1  80 kleleHnHela 90 
                                      ++ +HnH+l+
  Zjn_sc00107.1.g00160.1.sm.mkhc 219 LFVDDHNHKLS 229
                                     *********96 PP
2FAR146.71.1e-14460539190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 
                                     ++Yn ++ e GF +r s+s ++ rn+ ++++++vC ++g +  + ++         + r+gCk ++++++++d+ w++ 
  Zjn_sc00107.1.g00160.1.sm.mkhc 460 NYYNLHSWEKGFGIRCSSSDSN-RNQYVVMKELVCMCQGWPGANIRR---------SVRCGCKSRMVLRRTDDHGWYIR 528
                                     69***************98887.7777*************9997665.........9********************** PP

                            FAR1  80 kleleHnHela 90 
                                      ++ +HnH+l+
  Zjn_sc00107.1.g00160.1.sm.mkhc 529 LFVDDHNHKLS 539
                                     *********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-10150229IPR004330FAR1 DNA binding domain
PfamPF031011.9E-11460539IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAAVASGTPT FPNSQHLFSA PTAADAAVIH GGRPSDAAPS DRSAGLLADA GETSARGVLP  60
CQSAEKNTDS TDVAGGTLVD PPADVVKESA PWLITRRRQR GTCGPSERKP IVGRLTALEQ  120
SLLDYKKKPG GCVITPKEGV AFDSYNEAFN YYNLHSWEKG FGIRCSSSET NRQQYVNMKE  180
LVCMYQGWPG ANIRGSMRCG CKSRMVLRRT DDHGWYIRLF VDDHNHKLSG SLGEKSHWSS  240
HKHLDMHTTD IIKQLRSNNV NLSNVYGVMT SRLKPLCGAI AREVATDDIE TNLYGCLMRS  300
EPISSFKWIF CEFVSMMEYL SKVFRGLSQL CVPRTDPSGA TAADAPIIHG AGHPTLRLRV  360
DPVVCWLMWV KQVCVKNTDS IDVAGGMLVD PPVDVVGESA PWIIKRQRQG GTHGPSERKP  420
IVGRLTALEQ AMLDYKKKPG GCVVTPEEGV SFDSYNEAFN YYNLHSWEKG FGIRCSSSDS  480
NRNQYVVMKE LVCMCQGWPG ANIRRSVRCG CKSRMVLRRT DDHGWYIRLF VDDHNHKLSG  540
SLGKKRHWSS HKHLDMHTMD IIKQLKSNNN VNLSKALARV AATDDIETNL CGMPSGSIAK  600
GDSNFKSTQE ISLLPPSSIH LDNLDDPEVG VNPFSANLEG KSPSDDPINL DEEEHY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-13FAR1-related sequence 6