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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00106.1.g01940.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 23835.5 Da PI: 4.3611 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g Zjn_sc00106.1.g01940.1.sm.mk 19 RYKGVRFRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 68 7********.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-18 | 19 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.838 | 19 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 19 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-27 | 19 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.03E-19 | 19 | 79 | No hit | No description |
Pfam | PF00847 | 6.8E-11 | 19 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDDGAGASNG EVSSPPERRY KGVRFRKWGR WVSEIRMPNS RERIWLGSYE SAEKAARAFD 60 AAAVCLRGSR AGSLNFPESP PDVRYIPGAQ LTPEQIQAEA VRHANQPVIS PVAAANTAAS 120 SQEAAPAGSE SIDRMAMSMP GLPASTYSSL ATPGCGDDAL DWSFMDALPS MPVSSAGTNA 180 ELVSAMDDFM LGSPHPVMPP SGGAQDMIDG DDDHAFISDD LWRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-12 | 4 | 78 | 7 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973610.1 | 2e-98 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | K3YLA4 | 4e-97 | K3YLA4_SETIT; Uncharacterized protein | ||||
STRING | Si015027m | 8e-98 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 5e-24 | ERF family protein |