PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00106.1.g01580.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 496aa    MW: 51443.1 Da    PI: 10.5414
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00106.1.g01580.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.3e-18279333256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++keq   Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Zjn_sc00106.1.g01580.1.am.mk 279 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKAALARQLNLRPRQVEVWFQNRRARTK 333
                                   788899***********************************************98 PP
2HD-ZIP_I/II127.75e-41279369192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+
  Zjn_sc00106.1.g01580.1.am.mk 279 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKAALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTAENRRLH 359
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   ke +eLr +lk
  Zjn_sc00106.1.g01580.1.am.mk 360 KELAELR-ALK 369
                                   ******9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-18263329IPR009057Homeodomain-like
SuperFamilySSF466893.55E-18267336IPR009057Homeodomain-like
PROSITE profilePS5007117.151275335IPR001356Homeobox domain
SMARTSM003895.0E-16277339IPR001356Homeobox domain
CDDcd000865.64E-16279336No hitNo description
PfamPF000462.9E-15279333IPR001356Homeobox domain
PROSITE patternPS000270310333IPR017970Homeobox, conserved site
PfamPF021839.5E-11335369IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.9E-25335378IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MIRSSPACSL LPGHSRALVK PLSLGSKRHS LATPTSYLQL SPSSVPSSPS TVSRCLVILG  60
RGMELGLSLG KAAVAEAGTA APELGLGLGV GAGAARRVEG GNATAAAAVG GRWWAAAPAA  120
SPEPAVRLSL GLQWPPSGTG ECRAIKRVVV DFPYLSLRFG LASACTSNGT VTDPGAGVVP  180
PRHAGSSDAP RRGFDVNRAP SVSVSAAAGA AGLVDEDDDD GEGNRAAALS SSPNDSGGSF  240
PLDLGRRVHA EGAAQGGGGC GGERSSSRAS DEDEGASARK KLRLSKEQSA FLEDSFKEHS  300
TLNPKQKAAL ARQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTAENRRLHK  360
ELAELRALKT AQPFYMHLPA TTLSMCPSCE RVASNPVAAA AASSSAPAPS ASPVTPATSS  420
GAASLPAPPR EHRPSSFAAL FAATHSFPLA SQPRPPAPAS NLRVPVAGSR ENFWGFRGRP  480
LPSRSRLGSG KWRLLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327335RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702116.11e-139homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-118HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A317Y6621e-138A0A317Y662_MAIZE; Homeobox-leucine zipper protein HOX27
STRINGSi014954m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-67homeobox from Arabidopsis thaliana