 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00106.1.g00640.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 321aa MW: 34877.9 Da PI: 4.6351 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00106.1.g00640.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.3 | 3.1e-19 | 103 | 156 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Zjn_sc00106.1.g00640.1.sm.mk 103 KKRRLSTEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 156
45689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 133.2 | 9.6e-43 | 102 | 194 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
ekkrrls+eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy aL+++ydal++++++L+
Zjn_sc00106.1.g00640.1.sm.mk 102 EKKRRLSTEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYVALRQSYDALRADHDALR 182
69******************************************************************************* PP
HD-ZIP_I/II 82 keveeLreelke 93
+++++L +e+ke
Zjn_sc00106.1.g00640.1.sm.mk 183 RDKDALLAEIKE 194
*******99987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MVTGLGGHNY KKDGRDVAKK QFIMKRPSGS RSGGGDGLVS MVQSGKIFLV ISPVFFLSVA 60
TRRCGLRERD VGFACTDDGF VDVAVEEEAD EDTEMPVGGG GEKKRRLSTE QVRALERSFE 120
TENKLEPERK ARLARDLGLQ PRQVAVWFQN RRARWKTKQL ERDYVALRQS YDALRADHDA 180
LRRDKDALLA EIKELNAKLG DEDAAASFSS VKEEPVASDA DPPPAATAAQ GSSESDSSGV 240
VNDTETASEK KPAPTNAAEA EAVVPGAAAL EGEVLFHAQL LKVEGDEAAF LDDDAAACGG 300
FFADLQPPSL PWWTEPMEHW A
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 127 | 133 | ERKARLA |
| 2 | 150 | 158 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP097039 | 0.0 | FP097039.1 Phyllostachys edulis cDNA clone: bphyem105n11, full insert sequence. |
