PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00106.1.g00590.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 522aa MW: 57961.1 Da PI: 10.3098 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.1 | 5.4e-19 | 233 | 319 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtse 74 W++ e+++Li+a++e++++lrrg+lk+++Weev++ + +++ +qC++k+e+l+kry+ + ++ Zjn_sc00106.1.g00590.1.am.mk 233 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVaarcaatpGVNVQHKTGTQCRHKLEKLRKRYRTEGARPVT---- 309 *************************************999996644444488*****************98877764.... PP trihelix 75 ssstcpyfdqle 86 s +pyf++++ Zjn_sc00106.1.g00590.1.am.mk 310 --SLWPYFRRMD 319 ..68*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.0E-20 | 231 | 321 | No hit | No description |
SMART | SM00595 | 2.0E-5 | 240 | 326 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MWYTGMHRCA AVALAARARP VVSDFPSRAA CRRGRQCVAP GHGLEQRASY GGRHASPTQI 60 ACCGGRAPGI TSEPPLPALV PRSLTTGPCI STWLHESLSR HRNATERRPR RGALATAQRR 120 RGPRGRGPAA SRASAARQPP RARATHRVAR HGRQQHHLAR RGGWPNPHPE NSQRPPPPPL 180 IPRPVSSPYP PPPPPPPPSI TPNYSPAVQA MAQDADESPR RPALKKTAPA QPWSHVETMH 240 LIDAYEERWT ALRRGQLKAH QWEEVAAEVA ARCAATPGVN VQHKTGTQCR HKLEKLRKRY 300 RTEGARPVTS LWPYFRRMDR LERGPGATSS ANPPAAESPP AGASDEEEVQ EEEEEEDEEE 360 EEEELIPRNN NTRSINGIIR EFGSGLAPRH PQLQQPPPSI TPSTAPPRKR VSYEAFQARA 420 AAPEAEKVKE DEVEMARRPF RYGGANAELS AVLRDFSEGF MRLERRRMEV QWEIEQGWKE 480 TEARQTRMLQ DAQHGLCDTI AVACAVPPKK ARRDHGSNGD GF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040453 | 1e-114 | BT040453.1 Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds. | |||
GenBank | EU954325 | 1e-114 | EU954325.1 Zea mays clone 1462507 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ727853 | 1e-114 | KJ727853.1 Zea mays clone pUT5898 trihelix transcription factor (THX8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820374.1 | 1e-142 | uncharacterized protein LOC112896572 | ||||
TrEMBL | A0A0A9FZH6 | 1e-143 | A0A0A9FZH6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J15698.1.p | 1e-132 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 1e-17 | Trihelix family protein |