PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00106.1.g00430.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 274aa    MW: 30016.6 Da    PI: 8.5995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00106.1.g00430.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.2e-061742111255
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   RR++iN+++  L++l+P +   +     Ka +L + ++Y++sLq
  Zjn_sc00106.1.g00430.1.am.mk 174 RREKINERMKLLQDLVPGC---S---KVKAVMLDEIINYVQSLQ 211
                                   9*****************9...2...3589************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.064162210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-4169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-9173217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-7174215No hitNo description
Gene3DG3DSA:4.10.280.101.3E-10174215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPSPTREAKC SCRRFSGSSS HRRLEHDSFP VDSGLVERAV RCDQAKVTTR GGGGNDDNAE  60
LKVDDAHGDD GRSAEAAAGD CSSQGPDPDS KKRKRSNEDV LGTDQAKEPD AYTGSPNGSE  120
RSSGSARGNE HGPAAAAKRN RKGAKEADEA RKEGYVHVRA RKGQATSNHS LALRREKINE  180
RMKLLQDLVP GCSKVKAVML DEIINYVQSL QRQVEVRALF HRIDESVQEF FIQEIMRLIL  240
CALQFLSTKL AMVNPQLGIG IEGLVTKDVW SKMT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095KKRKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821587.11e-63transcription factor bHLH49-like
TrEMBLA0A3L6PPS35e-64A0A3L6PPS3_PANMI; Transcription factor bHLH49-like isoform X2
STRINGPavir.Fb01828.1.p3e-66(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-37bHLH family protein