PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00106.1.g00350.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 422aa MW: 46486.8 Da PI: 7.2073 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.4 | 1.1e-17 | 151 | 200 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq Zjn_sc00106.1.g00350.1.sm.mkhc 151 RSKHSATEQRRRGKINDRFQILREILPQN----DQKRDKASFLSEVIEYIRFLQ 200 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-23 | 148 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-19 | 149 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.844 | 149 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-15 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-15 | 151 | 204 | No hit | No description |
SMART | SM00353 | 3.2E-13 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MVHGPQACVN LEAKSWSMGF VLIQLWKTLP GHQWALPFAA AHCVAVASAR PQQQQQQMPL 60 ERKADGGFMD AGSGSSGGAG FDDDDCHAAR REVSSSLKGD ASVLQNPRLL RGSLVPFWRP 120 DGGRELTVRV ETKGGSCSGS AGTDQMPNTP RSKHSATEQR RRGKINDRFQ ILREILPQND 180 QKRDKASFLS EVIEYIRFLQ EKVQKYEVSQ QEWNQENAKV VPWSNIYFRS FWKNAQNKDE 240 TNGDTTSDPS QIIKNASSLG FPFAVKPGDE QELSEDNKKG CVPYKEADTP SNIPNDVASQ 300 QQAELAKPLP AEDRAVNSQM LKDPELAIDE GTISLSSQYS QGLLATLNHA LQNSGIDLSQ 360 ASLSVQINLG KRAIKRPAAS ANCTSEDLTS QISYDQAIRQ QQKSGDGALE HPQAMKRHKS 420 DR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822755.1 | 1e-173 | transcription factor BIM2-like isoform X2 | ||||
TrEMBL | A0A3L6RH25 | 1e-179 | A0A3L6RH25_PANMI; Transcription factor BIM1-like | ||||
STRING | Pavir.J38910.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-48 | BES1-interacting Myc-like protein 2 |