PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00105.1.g00850.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 280aa    MW: 30737.3 Da    PI: 9.9788
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00105.1.g00850.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA30.31.4e-09158183227
                     CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleee 27 
                                   +p++V aKQy++Il+RR +Rak+  +
  Zjn_sc00105.1.g00850.1.sm.mk 158 APIFVSAKQYEAILRRRTQRAKAGIS 183
                                   69********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF560532.19E-20584IPR020040Ribosomal protein L6, alpha-beta domain
Gene3DG3DSA:3.90.930.128.3E-22784IPR020040Ribosomal protein L6, alpha-beta domain
PfamPF003471.0E-91384IPR020040Ribosomal protein L6, alpha-beta domain
PRINTSPR000596.7E-82339IPR019906Ribosomal protein L6, bacterial-type
PRINTSPR000596.7E-86586IPR019906Ribosomal protein L6, bacterial-type
PROSITE profilePS511529.562156190IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.8E-6159182IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0019843Molecular FunctionrRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEAKFFRFLK LVGVGFKARS ESQGRELFLK LGYSHEVLFT APPAVRVFCF KPNIICCTGI  60
DKDRVHNFAG AVRSCKPPEV YKGKCKPGKK QKKQMNNCPR LPHLEGVQYP GSTAEVPEGS  120
ATATPHMSVD NSGPSELIAG QPRALRLRQL PSLIPGRAPI FVSAKQYEAI LRRRTQRAKA  180
GISRPSIKKR GQRSSTGCLP LARGKQGGAN ADISQATSSV PAVDFYGPFV ATNEDEEHVG  240
EDAFDSILNL NSPDFTTLLR LMMGDKYNTD ISEDVTWILV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946346e-69FP094634.1 Phyllostachys edulis cDNA clone: bphyst004m12, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3580023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-07nuclear factor Y, subunit A6