PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00104.1.g00180.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 436aa    MW: 45223.4 Da    PI: 6.0046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00104.1.g00180.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07332372954
                                   HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                    r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Zjn_sc00104.1.g00180.1.sm.mk 332 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 372
                                   69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-11328381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13328382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-11329377No hitNo description
PfamPF000106.2E-5332372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDHSFSDMLL SNSAWSGAGD GGAVVLPTDL GSGGGSGVVD GSSMSVLERL VLDEALAAAI  60
LELQQQQQGI TAAAPKMPAG GGGVGDAVAF PAMSTLTAPY ADVDADVLQR QQHRHRHHAA  120
MAMVADYDLT PATAAVAAVT SALFTNAASA GDGGTLGDPR VLTGPETAVT TAVSVVVTTT  180
TKSQQCEEER DGGCFSGQKQ RRTSRKRKAA SSAPTQESSL CSLLASSTAG DGGGIQIAFS  240
TSAQQAPGAN KRSKPSLSSG SSSISFDGRI AGAGGEDPVY EPDTEALAQV KEMIYRAAAM  300
RPVSLGPEME EAGERPRRRN VRISSDPQTV AARQRRERIS ERLRVLQKLV PGGAKMDTAS  360
MLDEAANYLR FLKSQVRELQ TLDRRNYGNA NANSSSAATM AGPPLSYNNG HGGVPSFAFP  420
ATETLLEARG GVEQQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-132AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-132AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-132AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-132CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814680.11e-123transcription factor LATE FLOWERING-like
TrEMBLA0A3L6STE11e-134A0A3L6STE1_PANMI; Transcription factor bHLH87-like
STRINGPavir.Ea01618.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-35bHLH family protein