PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00102.1.g00460.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 773aa MW: 81548.9 Da PI: 6.3962

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00102.1.g00460.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	254.7	3.4e-78	426	772	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 v++L e+A+ ++gd+ a+++Larl+ + a +g+p+ R a+yf+eAL+ l+ + +a +p ++++++++ +l Zjn_sc00102.1.g00460.1.am.mk 426 VDQLAEAAKLAEAGDAFGAREILARLNYRfpaAPAAGTPLLRSAFYFKEALRLALSP----TGEAPAPPASTPYDVVLKLG 502 689***********************999455566**************99....888889999999**** PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160 a+k+fsevsP+l+f+hlt+ qa+l+++ g++++H++Dfd+++G QW++L+q+La+R +++ l++T+++sp+s++ el+ Zjn_sc00102.1.g00460.1.am.mk 503 AYKAFSEVSPVLQFAHLTCVQAVLDELGGATCIHVLDFDVGMGEQWASLMQELAQR-RPATALKVTALVSPASHHPLELQL 582 ***************************************************9.7889**************** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 ++e+L++fA+elgv f+f+v ++++l++ eL ++ + +++aV+l + ++ + +++L+lvk+l +kvvv Zjn_sc00102.1.g00460.1.am.mk 583 IHENLSSFAHELGVLFQFDVY---NVDTLDPAELvAIASCDTVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVV 652 ***************95...889999999846677*******99998........4566********** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 v++ +d+++ +F++++++ ++ +++l++sl+a ++++e+++k+Er+l+++ +++ v ++++ + Wr +++ Zjn_sc00102.1.g00460.1.am.mk 653 SVDHGCDRTELPFAAHLFQVFQSCVSLLESLDAV-GTDAETAAKIERFLVQPGVEQRVVGRHRA---GVDKPLPWRTVFTS 729 ***************************998.8999***************988887...7777889*** PP GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aGF p a++ll+kv+ g+rve++ g+l+l+W++ +LvsvSaWr Zjn_sc00102.1.g00460.1.am.mk 730 AGFVP----------AESLLKKVALMGFRVESRGGALCLYWQRGELVSVSAWR 772 98..........689*********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.003	399	762	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-75	426	772	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MLPSKETRIK VTIILNVAIA AASVADQPVT TWWSRGVETG PSAFEVKTTA GADERQKVTP 60 LHSRRERECG NDAAFWGSHR PLLRLSTTPF VAPSTICKVV HAGRALVALR EPDECAHCSP 120 ADWTCREEED EEKRQAAAAP SPFLVRGCCT REGHAGALLL QHQQQQRQQG LDKVSGAGGL 180 IWEPTSVLDH RHSPSPSPPT STSTLSSPLG SATAGVAALA GPNAKNVSPP PVAGAWPGGA 240 AVDDAAAASG KEQEWQLTPL DMGLGAGEGW DPAGAVLPDA PAQPGLGPDH TFLRWIIGGE 300 DASAGMMDPP VLELDHAPSM VSSSFGPNLA FAPAMEDTKP APSFGHAPNF LLHHHQHHPQ 360 PHAAFFGSHP SFDAAAVPKR GHPMAGAPAP KLPPFPGVVG PPAGGFVPAL KPKAEAANDE 420 AAAAAVDQLA EAAKLAEAGD AFGAREILAR LNYRFPAAPA AGTPLLRSAF YFKEALRLAL 480 SPTGEAPAPP ASTPYDVVLK LGAYKAFSEV SPVLQFAHLT CVQAVLDELG GATCIHVLDF 540 DVGMGEQWAS LMQELAQRRP ATALKVTALV SPASHHPLEL QLIHENLSSF AHELGVLFQF 600 DVYNVDTLDP AELVAIASCD TVAVHLPVGS AHVAAMPAIL RLVKRLGAKV VVSVDHGCDR 660 TELPFAAHLF QVFQSCVSLL ESLDAVGTDA ETAAKIERFL VQPGVEQRVV GRHRAGVDKP 720 LPWRTVFTSA GFVPAESLLK KVALMGFRVE SRGGALCLYW QRGELVSVSA WRC

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MLPSKETRIK VTIILNVAIA AASVADQPVT TWWSRGVETG PSAFEVKTTA GADERQKVTP  60
LHSRRERECG NDAAFWGSHR PLLRLSTTPF VAPSTICKVV HAGRALVALR EPDECAHCSP  120
ADWTCREEED EEKRQAAAAP SPFLVRGCCT REGHAGALLL QHQQQQRQQG LDKVSGAGGL  180
IWEPTSVLDH RHSPSPSPPT STSTLSSPLG SATAGVAALA GPNAKNVSPP PVAGAWPGGA  240
AVDDAAAASG KEQEWQLTPL DMGLGAGEGW DPAGAVLPDA PAQPGLGPDH TFLRWIIGGE  300
DASAGMMDPP VLELDHAPSM VSSSFGPNLA FAPAMEDTKP APSFGHAPNF LLHHHQHHPQ  360
PHAAFFGSHP SFDAAAVPKR GHPMAGAPAP KLPPFPGVVG PPAGGFVPAL KPKAEAANDE  420
AAAAAVDQLA EAAKLAEAGD AFGAREILAR LNYRFPAAPA AGTPLLRSAF YFKEALRLAL  480
SPTGEAPAPP ASTPYDVVLK LGAYKAFSEV SPVLQFAHLT CVQAVLDELG GATCIHVLDF  540
DVGMGEQWAS LMQELAQRRP ATALKVTALV SPASHHPLEL QLIHENLSSF AHELGVLFQF  600
DVYNVDTLDP AELVAIASCD TVAVHLPVGS AHVAAMPAIL RLVKRLGAKV VVSVDHGCDR  660
TELPFAAHLF QVFQSCVSLL ESLDAVGTDA ETAAKIERFL VQPGVEQRVV GRHRAGVDKP  720
LPWRTVFTSA GFVPAESLLK KVALMGFRVE SRGGALCLYW QRGELVSVSA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-23	457	772	32	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464970.1	0.0	scarecrow-like protein 6
TrEMBL	C5WSJ8	0.0	C5WSJ8_SORBI; Uncharacterized protein
STRING	Sb01g029650.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6723	29	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	8e-78	GRAS family protein