 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00100.1.g00540.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 418aa MW: 45671.3 Da PI: 7.6972 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00100.1.g00540.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.4 | 1e-17 | 115 | 166 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +q+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k
Zjn_sc00100.1.g00540.1.am.mk 115 RRLRVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 166
467889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.8 | 4e-40 | 112 | 202 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
e+krrl +qv++LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L
Zjn_sc00100.1.g00540.1.am.mk 112 ERKRRLRVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALL 192
69******************************************************************************* PP
HD-ZIP_I/II 82 keveeLreel 91
+++++L++e+
Zjn_sc00100.1.g00540.1.am.mk 193 AQNKKLHAEV 202
******9987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MKPMATNGMA PSFFPANFLL QMHQPLPHHH HHPQQQDHPH HHDHEQHLLA PPPPSLSPFL 60
HDFAGAMAPP PMYPPDAGVS NDLHAEPPQQ QDGDAASDEE EGSAAAGGCV GERKRRLRVD 120
QVRTLERSFE VANKLEPERK AQLARALGLQ PRQVAIWFQN RRARWKTKQL EKDYDALRRQ 180
LDAARAENDA LLAQNKKLHA EVGDRTIHVG FNVICRKRAC RDRCRPYEHW ASCRPPMHRS 240
LCTACTMISH SIYPTNRHLA IGGPTPFCVR VVMRIMALKG GGGGGGGGRQ EAASELINLN 300
VKETEASCSN RSENSSEINL DISRPAPAAE ESRMNNHRAA ALPFYASAVG GRSGGGGGSS 360
LDIDQLLQHN HASPKMELGH GGGADTAAVS FGSLLCGGAV VDEQPPFWPW AADGHNFQ
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 111 | 116 | ERKRRL |
| 2 | 160 | 168 | RRARWKTKQ |
| 3 | 278 | 288 | KGGGGGGGGGR |
| 4 | 349 | 357 | GGRSGGGGG |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728412 | 1e-105 | KJ728412.1 Zea mays clone pUT6717 HB transcription factor (HB98) mRNA, partial cds. |
