PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00097.1.g00780.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 710aa MW: 74948 Da PI: 9.4615

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00097.1.g00780.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	265	387	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eae 76 +++k++++++hTkv+gR+RR+R++ +caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ Zjn_sc00097.1.g00780.1.am.mk 265 TVAKRPSKDRHTKVDGRGRRIRMPTLCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStlnlpmR-- 343 5789************************************************************999998885433221.. PP TCP 77 sssssasnsssg..................................k 89 a+++s++ + Zjn_sc00097.1.g00780.1.am.mk 344 ---AGAGANSARaapfqalalhphqqhdmsammgyhhllppqqqepS 387 ...22222222212222233333333333323333222222222210 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.536	271	325	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.3E-35	271	404	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MEGARGGRPP TVATVVVSFG SHGFGCRGGA RLRKMGLRRA PQETEPCSRR EGREEIRLPR 60 KTKLSNPTRP HFPVPVPDAE SPSLSLSSPL RSLAWLRSVL PAPPRAAFPH LRARHVLLLH 120 PTPVTAATPR HAAPGGQRRR LSISVRVVTE REGPFAGRRS ARGQTMDHGG GGGGGGGGAP 180 SSSNSGGTSG GRGSEQHPPH AFYYTGPAPV PAGSNSGAPP PPPQQSPFAG ALAITPAAGV 240 AEQSQAQAST AAGDKKAVVP AAAGTVAKRP SKDRHTKVDG RGRRIRMPTL CAARVFQLTR 300 ELGHKSDGET IEWLLQQAEP AIVAATGTGT IPANFSTLNL PMRAGAGANS ARAAPFQALA 360 LHPHQQHDMS AMMGYHHLLP PQQQEPSPQD SNPSASYMRK RYREDLFKED DDDDRQDPSA 420 PKAREQHHQQ QAASSTPQAP SAAMWAMAPN TAAPGAGAFW MVPVSATSAA AARPAEPQPM 480 WSFGAGSGAV QAPLQFMSRA TYPPGGTGGS GVSDTNLGVF GAAHPYNRGA SADQQQTQTE 540 QQGGGDRGAE DEEEGDDDSG EEDNGNNNGN GSGSQQASLQ ETKPLPMEED HYEDDRVGQL 600 RALMTANGAE KPETREDNIN FYYSTPPPGL PEEHPQGTAL RRAPGPPRPL ADEAPGEPQS 660 GHHLGLPFLR DPPPRPPLTT RSARRRCPPP SRRASRRPQP EEHEPGSAPL

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MEGARGGRPP TVATVVVSFG SHGFGCRGGA RLRKMGLRRA PQETEPCSRR EGREEIRLPR  60
KTKLSNPTRP HFPVPVPDAE SPSLSLSSPL RSLAWLRSVL PAPPRAAFPH LRARHVLLLH  120
PTPVTAATPR HAAPGGQRRR LSISVRVVTE REGPFAGRRS ARGQTMDHGG GGGGGGGGAP  180
SSSNSGGTSG GRGSEQHPPH AFYYTGPAPV PAGSNSGAPP PPPQQSPFAG ALAITPAAGV  240
AEQSQAQAST AAGDKKAVVP AAAGTVAKRP SKDRHTKVDG RGRRIRMPTL CAARVFQLTR  300
ELGHKSDGET IEWLLQQAEP AIVAATGTGT IPANFSTLNL PMRAGAGANS ARAAPFQALA  360
LHPHQQHDMS AMMGYHHLLP PQQQEPSPQD SNPSASYMRK RYREDLFKED DDDDRQDPSA  420
PKAREQHHQQ QAASSTPQAP SAAMWAMAPN TAAPGAGAFW MVPVSATSAA AARPAEPQPM  480
WSFGAGSGAV QAPLQFMSRA TYPPGGTGGS GVSDTNLGVF GAAHPYNRGA SADQQQTQTE  540
QQGGGDRGAE DEEEGDDDSG EEDNGNNNGN GSGSQQASLQ ETKPLPMEED HYEDDRVGQL  600
RALMTANGAE KPETREDNIN FYYSTPPPGL PEEHPQGTAL RRAPGPPRPL ADEAPGEPQS  660
GHHLGLPFLR DPPPRPPLTT RSARRRCPPP SRRASRRPQP EEHEPGSAPL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083691	1e-105	BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds.
GenBank	KJ726951	1e-105	KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808168.1	1e-113	transcription factor PCF3-like
TrEMBL	A0A3L6T4N8	1e-122	A0A3L6T4N8_PANMI; Transcription factor PCF3-like isoform X2
STRING	GRMZM2G089638_P01	1e-106	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	2e-40	TCP family protein