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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00094.1.g00720.1.sm.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
NF-YC |
| Protein Properties |
Length: 254aa MW: 27662.7 Da PI: 5.7836 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00094.1.g00720.1.sm.mkhc | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 60.4 | 3.8e-19 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
+++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl ++v +
Zjn_sc00094.1.g00720.1.sm.mkhc 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLSEVVSK 86
579************************************************************************99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60
TLNSFHLKQC VKRYSSFDFL SEVVSKVPDL GGADSCGDER GLPRRRKSNG SDQENDESKS 120
SKMVIRSSLS PRGRGRGRGR GRGRPPTKRK EVGYVQFEED SSMYAEQGEA LPGEDTVAKT 180
NHGNESVPQS INPAVDAASA APAPATSSKV EETNTNHQAD WPMPDAIGNI GVGPSGFGHL 240
TVQVDEDEDY DNED
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 106 | PRRRK |
| 2 | 133 | 142 | RGRGRGRGRG |
| 3 | 133 | 143 | RGRGRGRGRGR |
