PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00093.1.g01840.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 110aa MW: 12666.9 Da PI: 11.476 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.3 | 2.8e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvt skRr+g++KKA+EL vLCda+v v++fsstg+ly+y s Zjn_sc00093.1.g01840.1.sm.mk 9 KKIENITSRQVTSSKRRTGLFKKAKELAVLCDAQVGVLVFSSTGRLYDYTS 59 68***********************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.754 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.45E-32 | 3 | 62 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-26 | 3 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MVRGKTVMKK IENITSRQVT SSKRRTGLFK KAKELAVLCD AQVGVLVFSS TGRLYDYTST 60 SFGKQRQQLH NLQESNRYRN TRVNVMHREV LLPSIALLVQ KMMMTKFILS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656060.1 | 1e-29 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_015641670.1 | 9e-30 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 2e-28 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0P0WWA7 | 2e-29 | A0A0P0WWA7_ORYSJ; Os06g0347700 protein | ||||
STRING | OS06T0347700-00 | 3e-30 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 7e-28 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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