PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00093.1.g01810.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 139aa    MW: 15202.6 Da    PI: 9.9647
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00093.1.g01810.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.5e-2388137151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien+ nrqvt skRr+g++KKA+EL +LCda++ vi+f +tg+ly++s+
  Zjn_sc00093.1.g01810.1.am.mk  88 KRIENEANRQVT-SKRRAGVFKKAKELATLCDAQIGVIVFTNTGQLYDFSN 137
                                   79**********.************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-2980138IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.40880139IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-2082138IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-1482102IPR002100Transcription factor, MADS-box
PfamPF003192.7E-2089135IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-14116137IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEEALPGFKS IAVLQVVFSK PGCYKQSPEG NTDSLSLSLS LPLSLSLSLS LSLWVLSPPL  60
SFLSPVRKPA GDQCPDSRLM VRGKTVLKRI ENEANRQVTS KRRAGVFKKA KELATLCDAQ  120
IGVIVFTNTG QLYDFSNSW
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3566134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.22e-22AGAMOUS-like 16