PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00091.1.g01380.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 291aa    MW: 31175.4 Da    PI: 11.9574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00091.1.g01380.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15.1e-11147175331
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                                   r+h+e+ErrRR+riN  +++Lr+llP+ +
  Zjn_sc00091.1.g01380.1.am.mk 147 RSHSEAERRRRQRINGHLAKLRSLLPNTT 175
                                   78************************963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.623144199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.34E-8147213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9147202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-7147177No hitNo description
PfamPF000102.4E-8147175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MWEPGGLHGS HEALLLQSAG SGAGDVHGHA SGRMPWLGPA AAPSYSYIAP HAPPPPGLFG  60
GADAAGGPFG GFGVGGGYCG DGGGTAGAVG LFGLDHPSLH QQHHGTPGGG AAGSSRVVSG  120
LLGTLQAELN RMTSREIMDA KALAASRSHS EAERRRRQRI NGHLAKLRSL LPNTTKNELE  180
AWPYQACAIT GSIDLLRLLK ARWHAKEGPS RSLRPRRKPR VLRHALSFGE IELAARARQE  240
RTLVSERITS ASRTRRSRRQ ATHQKAKQRL ARMDHGSRPR MQRLFPRAPF L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217RPRRK
2213219RPRRKPR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680224e-48AK368022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678584.12e-44transcription factor AIG1
TrEMBLA0A1E5VGR14e-48A0A1E5VGR1_9POAL; Transcription factor bHLH30
STRINGSi013911m2e-43(Setaria italica)
STRINGGRMZM2G526668_P024e-44(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2467556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-11bHLH family protein