PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00091.1.g01300.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 133aa MW: 15206.6 Da PI: 11.1052 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.5 | 4.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr g++KKA+ELS+LCdaev +++fsstg+lye++s Zjn_sc00091.1.g01300.1.sm.mk 9 KRIENSTSRQVTFSKRRGGLFKKAKELSILCDAEVGLVVFSSTGRLYEFAS 59 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.84E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-33 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGRGKIVIKR IENSTSRQVT FSKRRGGLFK KAKELSILCD AEVGLVVFSS TGRLYEFAST 60 SMKSVIERYN EANEDHRMAI SARAEAKKKS KDQVMIDQIQ ELNRKVYGQS VSENPTGFMR 120 RRMTMNKRPG RNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-25 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 2e-25 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 2e-25 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 2e-25 | 1 | 76 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821378.1 | 8e-48 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6VAM4 | 6e-46 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A2T7D7M0 | 1e-46 | A0A2T7D7M0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IH16 | 4e-47 | A0A2T8IH16_9POAL; Uncharacterized protein | ||||
STRING | LPERR08G12860.1 | 2e-46 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-41 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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