PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00091.1.g00300.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 282aa    MW: 29351.8 Da    PI: 6.0239
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00091.1.g00300.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.4e-20102151255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+t eeAa a+++a+ +l+g
  Zjn_sc00091.1.g00300.1.sm.mk 102 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTSEEAALAYDQAAYRLRG 151
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-30101161No hitNo description
SuperFamilySSF541711.18E-22102161IPR016177DNA-binding domain
PROSITE profilePS5103223.209102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32102161IPR001471AP2/ERF domain
SMARTSM003804.9E-35102165IPR001471AP2/ERF domain
PfamPF008475.8E-15103151IPR001471AP2/ERF domain
PRINTSPR003675.5E-11103114IPR001471AP2/ERF domain
PRINTSPR003675.5E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAAAINQPST GEDLMRALET FILDAPPASF PAGAAAGHGG GFPCVGPAAQ LTPAQMQFIQ  60
AQLHLQRNPG LGPRAQPMKP ATSGGTASSA AAPAHPPRPQ KLYRGVRQRH WGKWVAEIRL  120
PRNRTRLWLG TFDTSEEAAL AYDQAAYRLR GDAARLNFPD NAASRAPLDP AVDAKLQTIC  180
ATIAAASKGK GGKGARAVPI NAPCAQQPES PSHSSSDEGT GSGSDDEGSS SAAAAAAVAA  240
VAPLAEMGQL DFSEVPWDEA ESFVLCKYPS YEIDWDALLA SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19101159463ATERF1
3gcc_A1e-19101159463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4938001e-118AF493800.1 Zea mays DRE binding factor 1 (dbf1) mRNA, complete cds.
GenBankEU9632051e-118EU963205.1 Zea mays clone 259110 DRE binding factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.11e-124ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A0A9FEZ51e-129A0A0A9FEZ5_ARUDO; Uncharacterized protein
STRINGPavir.Fa01600.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-53ERF family protein