PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00090.1.g01050.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 319aa MW: 33991.4 Da PI: 8.508 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.4e-12 | 138 | 184 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR r+ +++ +Lr+l+P+ +K++Ka+i AveY+ksLq Zjn_sc00090.1.g01050.1.am.mkhc 138 KTVVLERKRRVRMTEKLYQLRSLVPNI-----TKMDKASIIGDAVEYVKSLQ 184 55679*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.55E-13 | 132 | 184 | No hit | No description |
PROSITE profile | PS50888 | 15.707 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.14E-16 | 134 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 136 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 138 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MERHLLQPQH LMPSSGFFNL NGGSVAHFPS CGGCGFAAAP AGLLHDCGWA GDPMQLGGEM 60 FGGGVNTVCA LVGNQGWQCV DGSSLRDPPQ ASISLDGDGD GRPPLAVAER QSVPELAAKP 120 RRDEGNVMGA RKRKDRAKTV VLERKRRVRM TEKLYQLRSL VPNITKMDKA SIIGDAVEYV 180 KSLQSHARKL KEEVAALEAR QWSSSPGPQD PRHDHGVAVA NDKRQDEDAT GGARVASVGA 240 TRVGEGRFLV TVECERRDGA AARLFAAVES LACFRVESSS VGRSAPDRLV STATLKVTIA 300 GGGAAHSFRH ALDARLHDD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 131 | 146 | KRKDRAKTVVLERKRR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826116.1 | 3e-94 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2 | ||||
TrEMBL | A0A2S3I6T6 | 9e-93 | A0A2S3I6T6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01979.1.p | 1e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5546 | 30 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28160.1 | 7e-36 | FER-like regulator of iron uptake |