PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00088.1.g02540.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 352aa MW: 36969.9 Da PI: 9.7942 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 258 | 280 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H r+H Zjn_sc00088.1.g02540.1.am.mk 258 HECHVCRKTFPTGQALGGHKRRH 280 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.4E-12 | 196 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.08 | 196 | 218 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.468 | 196 | 223 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.58E-8 | 196 | 218 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 198 | 218 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.58E-8 | 253 | 280 | No hit | No description |
Pfam | PF13912 | 1.3E-11 | 258 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 258 | 280 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 258 | 280 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 260 | 280 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MLQDRRHLPS WRAGNRGLSA APQLGRTRPG QSCACVELAR RAGSRGLWAV PQLGSARPGR 60 SCAWVEWAMS GWAVTRTSDL PVQALLVNTA PAGCGDVSAS NSSYSTTLPR GCFDRQEKAM 120 AVDAIIDATV AAATSSDQEV EASTSSMVTV KRRRSRPPKR LPRKEPTEEE YLALCLVMLS 180 RGRRGAGPEG DDLLIHACSV CGKAFASYQA LGGHKASHRN PAPPAKEDQK PPSPPSSSSA 240 RSASGNDKAP SAAATALHEC HVCRKTFPTG QALGGHKRRH YDGTLGSAAA PARSSSSSKL 300 GEGISRAAAR AAAPVGFIDL NLPALPEPCA AQDEDEVLSP LACKKPRLMI PA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU955742 | 1e-33 | EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808181.1 | 5e-56 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 3e-39 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A2S3HEY6 | 1e-54 | A0A2S3HEY6_9POAL; Uncharacterized protein | ||||
STRING | Sb08g019490.1 | 1e-47 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19580.2 | 2e-31 | zinc-finger protein 2 |