PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00088.1.g02100.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 521aa MW: 55510.2 Da PI: 10.1157

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00088.1.g02100.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	337	412	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55 ++h+ E+rRR ri +++ +L++l+P + ++ + a++Le++++Y+k Lq Zjn_sc00088.1.g02100.1.am.mk 337 ETHSLTEKRRRCRITERLRTLQQLVPGCDkvsetsfsstigfrdrqwernlqHELVFTSNHASTLEQTIRYMKWLQ 412 58***********************555***************997666666999*********9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-10	333	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.277	334	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	337	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.10E-9	337	416	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.2E-13	337	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-9	340	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MSHGTAARRR WPLADSRMAV AGGRSTGTAS VGSGGASPSR PGRHRRQRSI PPPPQSNAAS 60 GPAMRLATAP GKVMIRGQVR PGVFVPVAPV LPFVQHPAVT MHAAPPYPNV APQPDQYVAT 120 DATSSRWPAA AAVLPREIIS AMAGAAPSTN TKPAVQTPKG LHMYDGTREL ARRLLPCVRC 180 SAILIFIRRL SLSLTHPHQH HHHPPPPLPR SSPQPSDASA ASEMNYPDET YGDLWCNPEV 240 DIAGETDADD ANRLLPGMLS TSGDVVVEQA AVSGNSAPPP VHDEPDDKAA LPPDRPSEHE 300 MASWLAAIVR GDERDPSEKA AAGGATVTPA RRPHHGETHS LTEKRRRCRI TERLRTLQQL 360 VPGCDKVSET SFSSTIGFRD RQWERNLQHE LVFTSNHAST LEQTIRYMKW LQHQVQAVPV 420 VAAPPLRPPA AVYSVAQPPA GVAPMVLGPV PMVPLVRPLL PYAHYPAGPA PAVLVPVAAA 480 PPPPLYPAPA STALATPGPG PSGAANRRHG SSVRKLKEEQ K

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MSHGTAARRR WPLADSRMAV AGGRSTGTAS VGSGGASPSR PGRHRRQRSI PPPPQSNAAS  60
GPAMRLATAP GKVMIRGQVR PGVFVPVAPV LPFVQHPAVT MHAAPPYPNV APQPDQYVAT  120
DATSSRWPAA AAVLPREIIS AMAGAAPSTN TKPAVQTPKG LHMYDGTREL ARRLLPCVRC  180
SAILIFIRRL SLSLTHPHQH HHHPPPPLPR SSPQPSDASA ASEMNYPDET YGDLWCNPEV  240
DIAGETDADD ANRLLPGMLS TSGDVVVEQA AVSGNSAPPP VHDEPDDKAA LPPDRPSEHE  300
MASWLAAIVR GDERDPSEKA AAGGATVTPA RRPHHGETHS LTEKRRRCRI TERLRTLQQL  360
VPGCDKVSET SFSSTIGFRD RQWERNLQHE LVFTSNHAST LEQTIRYMKW LQHQVQAVPV  420
VAAPPLRPPA AVYSVAQPPA GVAPMVLGPV PMVPLVRPLL PYAHYPAGPA PAVLVPVAAA  480
PPPPLYPAPA STALATPGPG PSGAANRRHG SSVRKLKEEQ K

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6283	24	52