PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00088.1.g01560.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 536aa    MW: 58018 Da    PI: 8.1435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00088.1.g01560.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87e-17253299455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY++sLq
  Zjn_sc00088.1.g01560.1.am.mk 253 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLRSLQ 299
                                   6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.4E-21246306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-18246303No hitNo description
SuperFamilySSF474591.57E-20247309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-14253299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MNQFVHDWAS SMGDAFAPLG VEDDGLMELL WCNGHVVMQS QAPRKPPRSD KEEAVQGNEA  60
EAWFQCPIED PLERDLFSEL FGETPADVPS RAACKEEEDC AAVTAPQLSR PNKACLEEIA  120
GVSNCAVGKP DAGGDGEAAT ETGESSMLTI GSSFCGSNHV QTTPRVVPLT PPRGGKAGAR  180
ARDKRKQRDV AETEVRRTRA AGVFLPRKRS ITRPYRNNDT AAALQDVEFE SAVVTCEPAQ  240
KLKTAKRRRA AEVHNLSERR RRDRINEKMK ALQELIPHCN KTDKASMLDE AIEYLRSLQL  300
QLQVMWMGGG MATAAPVMFP AGVHQYMQRM VGPPHVAAMP RLPPFMAPPA VQSPPVGQMP  360
VADPYAGCLA VDSLQTPGPM HYLQGVNFYQ QQSPAPPPPP VVPGGSLPAA TALTLPSNNT  420
LHKAHELQMG PTCSRDRRLE IRTPVPSASV PAAPFGAVQR PEIRGPVHSS YTEVNCSELN  480
RRQCWQTCEP VSTLKKPGNG RSEQKGAAVT LSSHLCRPMS CRPGPRAPGP GPGRVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186ARARDKRKQ
2181187RDKRKQR
3241247LKTAKRR
4246261RRRAAEVHNLSERRRR
5257262ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963135.11e-141transcription factor PIF4 isoform X1
RefseqXP_004963136.11e-141transcription factor PIF4 isoform X1
RefseqXP_022680515.11e-141transcription factor PIF4 isoform X1
TrEMBLK3Z6M71e-139K3Z6M7_SETIT; Uncharacterized protein
STRINGSi022196m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-39phytochrome interacting factor 4