PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00088.1.g01520.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 274aa MW: 29548.6 Da PI: 9.8078

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00088.1.g01520.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.8	8.9e-36	11	102	36	128
NAM 36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrap 114 + + ++v P+ L+++++ + +ewyfFs +d+kyatg+r+nrat sgyWkatgkd++v + +g+lvg++ktLvfy+grap Zjn_sc00088.1.g01520.1.am.mkhc 11 HQHACTVSPSLLNAAASVGPTEWYFFSLKDRKYATGQRTNRATVSGYWKATGKDRPVAR-RGALVGMRKTLVFYQGRAP 88 55689999**987788999*********************************9.999************ PP NAM 115 kgektdWvmheyrl 128 kg+kt+Wvmheyr+ Zjn_sc00088.1.g01520.1.am.mkhc 89 KGRKTEWVMHEYRM 102 **********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.339	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	7.59E-40	10	126	IPR003441	NAC domain
Pfam	PF02365	5.6E-16	24	102	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MLWFCDHKLV HQHACTVSPS LLNAAASVGP TEWYFFSLKD RKYATGQRTN RATVSGYWKA 60 TGKDRPVARR GALVGMRKTL VFYQGRAPKG RKTEWVMHEY RMEGHEQSPK LAAKEQDWVL 120 CRVICKKKSA GGGATTKPAR GFATNGYDTA TTTSPPPPAL MDTTLAQLQA AMNTKGAGAG 180 AIEQVPCFSS FNNIASNSVS AANAAQQCYL PVATSSNGMS YLDHGLTDLG SCFDPLNSDK 240 KWLKAVLSQV GGAVMHSPPP DVAAAASSTW MNHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-32	17	130	57	169	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-32	17	130	57	169	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-32	17	130	57	169	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-32	17	130	57	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	17	130	60	172	NAC domain-containing protein 19
3swm_B	1e-31	17	130	60	172	NAC domain-containing protein 19
3swm_C	1e-31	17	130	60	172	NAC domain-containing protein 19
3swm_D	1e-31	17	130	60	172	NAC domain-containing protein 19
3swp_A	1e-31	17	130	60	172	NAC domain-containing protein 19
3swp_B	1e-31	17	130	60	172	NAC domain-containing protein 19
3swp_C	1e-31	17	130	60	172	NAC domain-containing protein 19
3swp_D	1e-31	17	130	60	172	NAC domain-containing protein 19
4dul_A	9e-32	17	130	57	169	NAC domain-containing protein 19
4dul_B	9e-32	17	130	57	169	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805880.1	1e-131	NAC domain-containing protein 21/22-like
TrEMBL	A0A2T7EJ77	1e-130	A0A2T7EJ77_9POAL; Uncharacterized protein
STRING	Pavir.J34789.1.p	1e-116	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10022	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.1	2e-46	NAC domain containing protein 1