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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00086.1.g01920.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 522aa MW: 56726.6 Da PI: 8.5862 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.1 | 2.5e-10 | 200 | 235 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka+i++Le+ L++ Zjn_sc00086.1.g01920.1.am.mkhc 200 KMLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQ 235 7789***********************985544444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-5 | 196 | 249 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.0E-9 | 197 | 241 | No hit | No description |
PROSITE profile | PS50217 | 9.002 | 198 | 242 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-7 | 200 | 235 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.5E-7 | 200 | 242 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 203 | 218 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.0E-28 | 285 | 358 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MGDKPWQQPQ HEQAASYSHA RMIQASSSAI HGGTIGHDPG GYDMAEFDQR LFLYLNSQDQ 60 TSSIIQEHPQ TLNIFPSQPM HIVEPAPNYK QLNLWQGSMA TNNTASHTSA SPSKRPPPPS 120 SSPPSKPAPA AVKVGSVPSK ICGVEISLLL ARDDTSIFDR HRQREGNGGS GASKHCGGRT 180 PSTSDHQEGQ GQGPKPRDPK MLRRLAQNRE AARKSRLRKK AYIQNLETSR IRLSQLEQEL 240 HRSRGQGAVF GGGTLSGSGI GVVSPEAAWF DAEHARWTEE HGKVMRHLRA ALDEQQDDAQ 300 LRQLVDAAAA HHGVLAELKA AAARADAFHL VSGTWVSAAE RCFLWIAGFR PSDLVKVAAR 360 HAEPLTEAQA MGVCGLQQRA REAEAALEQE LHAMHRSVSE AVSSDAAALL CPYPDVPGYM 420 ATMSVAVSKL ASLETFVRQA DALRLQTLHR LPQILTARQA AQCFLAIADY SHRLRALSEL 480 WHTRPRQEAV NAPAAAGSSQ RPGYYLSSGT FVGLDTQPDR EG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU951316 | 6e-55 | EU951316.1 Zea mays clone 695528 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951578.1 | 0.0 | transcription factor TGAL9 isoform X3 | ||||
Swissprot | Q52MZ2 | 1e-133 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A368PHB2 | 0.0 | A0A368PHB2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J04905.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2732 | 36 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-88 | bZIP family protein |