 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zjn_sc00086.1.g01820.1.am.mk | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
| Family | GRAS | ||||||||
| Protein Properties | Length: 453aa MW: 48841.5 Da PI: 6.5613 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 305.7 | 1.1e-93 | 79 | 448 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81
+el+l+cA+ ++ gd a+++++ l la p+ d+ Rla +f++ALa+r+ +++ e++++ p + s +a+
Zjn_sc00086.1.g01820.1.am.mk 79 RELVLACADRLHRGDVDGARRVVEALLSLADPRSdDAADRLAYHFARALARRVDGKGREVAESPVPPAPS-------PSAY 152
5789*************************9998879*******************999999887665555.......4788 PP
GRAS 82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskee 157
+++++ P+l+f+hltaNqaIlea+++ +rvHi+D+d+ +G+QWp+Llqa+a+R+ gpp++RiTg g +++
Zjn_sc00086.1.g01820.1.am.mk 153 LAYNQMAPFLRFAHLTANQAILEAAATGvaRRVHIVDLDAAHGVQWPPLLQAIAERAdpdLGPPEVRITGAGT----DRDV 229
99**********************999878***************************66666***********....**** PP
GRAS 158 leetgerLakfAeelgvpfefnvl...vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
+++tg+rL+ fA++l++pf+f+++ ++l++ L+++p+E+l+Vn+vl lh+l ++++++ +L+ vks
Zjn_sc00086.1.g01820.1.am.mk 230 IHRTGDRLRAFASSLNLPFRFHPFllpCPTQLAAYraISTGLELHPDETLVVNCVLFLHQLG-GEGEVAD----FLRWVKS 305
***********************95552223333311245679999***************8.5555555....******* PP
GRAS 234 lsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
++P+vv+++e+ea+ ++ ++ +r++ a++yysa+fd+lea +p+ s +r +vE+e+lg+ei ++ a ++
Zjn_sc00086.1.g01820.1.am.mk 306 MNPTVVTIAEREASIGGYcpnDLPRRVAAAMDYYSAVFDALEAMVPPGSADRLSVEHEILGQEIDAAIDPCLAG--GMSRR 384
************9997654559**********************************************987776..56789 PP
GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+e W ++ ++aG++p pls++a++qa+ llr ++ s+gy vee +g+ +lgW++rpL+svS+W+
Zjn_sc00086.1.g01820.1.am.mk 385 FEWWASAARAAGLSPRPLSTFAVSQARFLLRLHYpSEGYVVEEARGACFLGWQTRPLMSVSSWQ 448
9**************************************************************6 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 49.875 | 52 | 427 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.9E-91 | 79 | 448 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 453 aa Download sequence Send to blast |
MHNGTGRMIA NSALSGLCRP ELRFACARAP GCYTGHALLR TLPPDAAMLG APGGGRDDHG 60 EAQPHENRVG PAAAPSSPRE LVLACADRLH RGDVDGARRV VEALLSLADP RSDDAADRLA 120 YHFARALARR VDGKGREVAE SPVPPAPSPS AYLAYNQMAP FLRFAHLTAN QAILEAAATG 180 VARRVHIVDL DAAHGVQWPP LLQAIAERAD PDLGPPEVRI TGAGTDRDVI HRTGDRLRAF 240 ASSLNLPFRF HPFLLPCPTQ LAAYRAISTG LELHPDETLV VNCVLFLHQL GGEGEVADFL 300 RWVKSMNPTV VTIAEREASI GGYCPNDLPR RVAAAMDYYS AVFDALEAMV PPGSADRLSV 360 EHEILGQEID AAIDPCLAGG MSRRFEWWAS AARAAGLSPR PLSTFAVSQA RFLLRLHYPS 420 EGYVVEEARG ACFLGWQTRP LMSVSSWQSA VEQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 3e-49 | 114 | 448 | 38 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AB491742 | 0.0 | AB491742.1 Zoysia japonica ZjLsL gene for lateral suppressor, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025806722.1 | 0.0 | protein MONOCULM 1 | ||||
| Swissprot | Q84MM9 | 1e-141 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
| TrEMBL | W8VJT6 | 0.0 | W8VJT6_9POAL; Lateral suppressor | ||||
| STRING | Pavir.J22770.1.p | 0.0 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3653 | 34 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G55580.1 | 1e-78 | GRAS family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|