PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00080.1.g01320.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 270aa    MW: 29329 Da    PI: 8.9635
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00080.1.g01320.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-11555146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                    ++rWT+eE+  l  +v+++G g+W+tI +          R+  ++k++w++
  Zjn_sc00080.1.g01320.1.am.mkhc  5 KQRWTAEEEAALRAGVARHGVGNWRTILKDPEfsstlCYRSNVDLKDKWRN 55
                                    79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.934161IPR017930Myb domain
SuperFamilySSF466895.1E-16258IPR009057Homeodomain-like
SMARTSM007179.2E-8459IPR001005SANT/Myb domain
PfamPF002491.5E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-13556IPR009057Homeodomain-like
CDDcd116602.24E-20657No hitNo description
SuperFamilySSF467852.88E-6120158IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-7120158IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.3E-5126158IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGVPKQRWTA EEEAALRAGV ARHGVGNWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVVA  60
TASGSREKGR AGVKKTRPAP KNNDQSMTVN TITSDADEEI ADVKPIASLS GEAWNNSNPK  120
KSNSRIDNVI LEAIKNLKEP TGSHRTTIAN YIEVNRKYRI APSSPYSEGR SPKMMLLEDV  180
KREPFKGGLD DSKTLTRAQV DADLARMLTM TAEEAAAAAA RAVAEAEAIM AEAEAAAREA  240
EAAEADAQAA QAFAEAALLT LKNRKLMSQA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968284.11e-114single myb histone 5
RefseqXP_004968285.11e-114single myb histone 5
RefseqXP_022682871.11e-114single myb histone 5
SwissprotC0HIA31e-106SMH6_MAIZE; Single myb histone 6
TrEMBLK3XKF21e-113K3XKF2_SETIT; Uncharacterized protein
STRINGPavir.Ia01166.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-54telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]