PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g03540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 236aa    MW: 25606.7 Da    PI: 7.3148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g03540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-194292155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++aa+++l+g
  Zjn_sc00078.1.g03540.1.am.mk 42 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 92
                                  679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-3043106IPR001471AP2/ERF domain
PROSITE profilePS5103220.82443100IPR001471AP2/ERF domain
CDDcd000185.89E-1744102No hitNo description
PRINTSPR003671.3E-94455IPR001471AP2/ERF domain
PfamPF008475.6E-134492IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2844100IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2044100IPR016177DNA-binding domain
PRINTSPR003671.3E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDEGDLQFRH QSNQKRSRKC CPLRRSRKGC MKGKGGPENQ QCPFRGVRQR TWGKWVAEIR  60
EPNRGARLWL GTFATALEAA RAYDAAARAL YGDCARLNLA AATTPAHTVA AADVRSMTTP  120
CCSADDSANS SVISQVTAVL LPGRHCLMTQ QVAAAGGGTG AGINDSITRT RTAIQQQTDQ  180
LHQLEDDDEG EDFEQFVTRL PKAEDFGLEG FPPEVFDDDA GGIGWPAGMT RVVPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1440991171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9520584e-85EU952058.1 Zea mays clone 1066007 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.13e-71dehydration-responsive element-binding protein 2C
SwissprotQ84ZA13e-72DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY938e-70A2YY93_ORYSI; Uncharacterized protein
STRINGOS08T0565200-011e-70(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-28ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]