PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g02350.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 254aa    MW: 27475.3 Da    PI: 8.2983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g02350.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1387132454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  Zjn_sc00078.1.g02350.1.am.mk  87 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAVSYIAEL 132
                                   799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28883132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-1187132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-1287137No hitNo description
SuperFamilySSF474599.16E-1787154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1787146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDELFCATSS GSPSSPASWL HFVSSCEVPE QWLGGGGEDE LFLPGSPVVA PRSSASNNHQ  60
SAERPVQTVP KKRGRKPGSR TGCPVISHVE AERQRRDKLN RRFCDLRAAV PTVSRMDKAS  120
LLADAVSYIA ELRGRVEKLE AEAKQQLAEN AAAAAFPSFG SQEEKLEVRM VGRDAAALRL  180
TSAARHAPAR LMDALRWMDL PVQHASVCRA GGVTVLDAVV DVPAGLLQDE ACLREALLQK  240
LRGGGCRSFF FQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-2086149773Transcription factor MYC2
5gnj_B8e-2086149773Transcription factor MYC2
5gnj_E8e-2086149773Transcription factor MYC2
5gnj_F8e-2086149773Transcription factor MYC2
5gnj_G8e-2086149773Transcription factor MYC2
5gnj_I8e-2086149773Transcription factor MYC2
5gnj_M8e-2086149773Transcription factor MYC2
5gnj_N8e-2086149773Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974088.11e-77transcription factor bHLH14
TrEMBLA0A368RPQ12e-76A0A368RPQ1_SETIT; Uncharacterized protein
STRINGSi015343m2e-76(Setaria italica)
STRINGSb07g025310.11e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-28bHLH family protein