PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g01870.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 269aa    MW: 28420.4 Da    PI: 9.0583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g01870.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20102152155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++ a+ +++g
  Zjn_sc00078.1.g01870.1.am.mkhc 102 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDDAAVRFKG 152
                                     68********.**********64....55**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-13102151IPR001471AP2/ERF domain
CDDcd000183.52E-19102161No hitNo description
PROSITE profilePS5103225.053103160IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22103161IPR016177DNA-binding domain
SMARTSM003801.2E-35103166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32103161IPR001471AP2/ERF domain
PRINTSPR003673.2E-12104115IPR001471AP2/ERF domain
PRINTSPR003673.2E-12126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDRPRDTAGA SAPRAPSSSS PYDGHGEHSG GGGGSACQPS VPAAEEEHAV MVAALAHVIG  60
SGRRGSGEVT HAVLGEQGTT PAHGAAPPPA TTVAEQQQQP RPRYRGVRQR PWGKWAAEIR  120
DPVKAARVWL GTFDTAEDAA RAYDDAAVRF KGAKAKLNFP HRHHAAALHL QHRWQPGTAV  180
ASTSMPRLPR AAPVAPTAAH HPLRLEEFPD LHRYTYLLQS GDVDLQQATS SRAAPAQSST  240
TMTTSAVARD DQEASGPPSD RPSPWPGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-24104162665ATERF1
3gcc_A9e-24104162665ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642528e-65AK064252.1 Oryza sativa Japonica Group cDNA clone:002-105-C06, full insert sequence.
GenBankAP0044648e-65AP004464.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0665C04.
GenBankAP0149648e-65AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3418278e-65AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
GenBankCP0126168e-65CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188611.14e-40ethylene-responsive transcription factor RAP2-6-like
TrEMBLA0A287WKF43e-40A0A287WKF4_HORVV; Uncharacterized protein
STRINGMLOC_10878.13e-40(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-22ERF family protein