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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zjn_sc00078.1.g01500.1.sm.mkhc |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
M-type_MADS |
Protein Properties |
Length: 142aa MW: 16186.1 Da PI: 9.122 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zjn_sc00078.1.g01500.1.sm.mkhc | genome | ZGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 77.1 | 1.3e-24 | 45 | 94 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ rqv fskRr+g++KKA+EL LCda+va+i+fs+ g+lye++s
Zjn_sc00078.1.g01500.1.sm.mkhc 45 RIEDRVSRQVRFSKRRKGLFKKAFELAELCDAQVALIVFSPAGRLYEFAS 94
8***********************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 142 aa
Download sequence Send
to blast |
MDAEEARNPE LRQREEEARA GGEGDGRNEM KKAAKKKRGR VEMRRIEDRV SRQVRFSKRR 60 KGLFKKAFEL AELCDAQVAL IVFSPAGRLY EFASSNSRVL EPNLNDLNVD ELREYTADEG 120 DRASSNSWLV MKSFGSSIKE GD
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1n6j_A | 2e-16 | 38 | 112 | 2 | 84 | Myocyte-specific enhancer factor 2B |
1n6j_B | 2e-16 | 38 | 112 | 2 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_P | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 38 | 112 | 3 | 85 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KF469336 | 4e-31 | KF469336.1 Brachypodium distachyon MADS-box transcription factor 42 mRNA, complete cds. |