PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g01500.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 142aa    MW: 16186.1 Da    PI: 9.122
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g01500.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-244594251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    rie+   rqv fskRr+g++KKA+EL  LCda+va+i+fs+ g+lye++s
  Zjn_sc00078.1.g01500.1.sm.mkhc 45 RIEDRVSRQVRFSKRRKGLFKKAFELAELCDAQVALIVFSPAGRLYEFAS 94
                                    8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.2873696IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-303695IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-263858IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-253897IPR002100Transcription factor, MADS-box
CDDcd002655.71E-3238101No hitNo description
PfamPF003191.1E-244592IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-265873IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-267394IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDAEEARNPE LRQREEEARA GGEGDGRNEM KKAAKKKRGR VEMRRIEDRV SRQVRFSKRR  60
KGLFKKAFEL AELCDAQVAL IVFSPAGRLY EFASSNSRVL EPNLNDLNVD ELREYTADEG  120
DRASSNSWLV MKSFGSSIKE GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A2e-1638112284Myocyte-specific enhancer factor 2B
1n6j_B2e-1638112284Myocyte-specific enhancer factor 2B
1tqe_P2e-1638112385Myocyte-specific enhancer factor 2B
1tqe_Q2e-1638112385Myocyte-specific enhancer factor 2B
1tqe_R2e-1638112385Myocyte-specific enhancer factor 2B
1tqe_S2e-1638112385Myocyte-specific enhancer factor 2B
6c9l_A2e-1638112385Myocyte-specific enhancer factor 2B
6c9l_B2e-1638112385Myocyte-specific enhancer factor 2B
6c9l_C2e-1638112385Myocyte-specific enhancer factor 2B
6c9l_D2e-1638112385Myocyte-specific enhancer factor 2B
6c9l_E2e-1638112385Myocyte-specific enhancer factor 2B
6c9l_F2e-1638112385Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693364e-31KF469336.1 Brachypodium distachyon MADS-box transcription factor 42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820080.12e-34MADS-box transcription factor 51-like isoform X1
RefseqXP_025820081.12e-34MADS-box transcription factor 51-like isoform X1
RefseqXP_025820082.12e-34MADS-box transcription factor 51-like isoform X2
TrEMBLA0A2T7D9Y53e-33A0A2T7D9Y5_9POAL; Uncharacterized protein
STRINGSi014540m4e-33(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-26AGAMOUS-like 20