PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00078.1.g01160.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 629aa MW: 67164.2 Da PI: 10.5616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00078.1.g01160.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.1	2.5e-06	284	312	4	35
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskaps 35 +h+ +Er RR+ri +++ L++l+P + ++ Zjn_sc00078.1.g01160.1.am.mk 284 SHSLAERVRRERISQRMKVLQDLVPGC---NK 312 8************************98...43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-7	278	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.07E-5	278	314	No hit	No description
PROSITE profile	PS50888	9.413	280	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-7	283	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MSDRVNLSLL PSRRKQGIAS PVHHHFDLQP IIHSPKHPST PTPSPKAAPS YKTSSSASDS 60 PPKEGSIPEI HHQARGRFSD GALVNSLPSR PASGDYIASL LSSSPRLDFG VLGGVSVLDG 120 AAGRDGGDSL EKFCGDPGFA ERAARLSSFS GERFAGAAGL FGLPPPALAA SNGGSRETSS 180 VSDPASAMRD ANAKKRKAPA PLKGKGKESS SQTGEQNDSD AKRCKTDGVE KESSPVKPKA 240 EQAGSDISVE DNGQKPGKGK NAKPVEPPKD YVHVRARRGQ ATDSHSLAER VRRERISQRM 300 KVLQDLVPGC NKQRNFWEED LPGVFHIENG QSQENGVSAQ SFHGSASLSP PASYSRENAV 360 ELYLVRNHSG LSALRGSELF VHSSLSFGAG AGNAKGFPVV VFHLDSLKVK RRYYEAPNFR 420 HASKTAGRRR AAFNAMPRHF PPPSLYVSAS TLCCMETRGN AGCGSGVVLD RVPPVRRSTL 480 KYGFSRPASA IGVNRRRGAR TAARAVQHAL HMSISLPSFV FGSRTCRASA SATTLMSHEN 540 GADRINIGHE ARRVRCHDGR PTRSRSGQRS CLDGHGVVEI SPSKIPSPRA GVPLLRRRRG 600 CGPATITATD REVDGGDESW SVYTAPIDE

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MSDRVNLSLL PSRRKQGIAS PVHHHFDLQP IIHSPKHPST PTPSPKAAPS YKTSSSASDS  60
PPKEGSIPEI HHQARGRFSD GALVNSLPSR PASGDYIASL LSSSPRLDFG VLGGVSVLDG  120
AAGRDGGDSL EKFCGDPGFA ERAARLSSFS GERFAGAAGL FGLPPPALAA SNGGSRETSS  180
VSDPASAMRD ANAKKRKAPA PLKGKGKESS SQTGEQNDSD AKRCKTDGVE KESSPVKPKA  240
EQAGSDISVE DNGQKPGKGK NAKPVEPPKD YVHVRARRGQ ATDSHSLAER VRRERISQRM  300
KVLQDLVPGC NKQRNFWEED LPGVFHIENG QSQENGVSAQ SFHGSASLSP PASYSRENAV  360
ELYLVRNHSG LSALRGSELF VHSSLSFGAG AGNAKGFPVV VFHLDSLKVK RRYYEAPNFR  420
HASKTAGRRR AAFNAMPRHF PPPSLYVSAS TLCCMETRGN AGCGSGVVLD RVPPVRRSTL  480
KYGFSRPASA IGVNRRRGAR TAARAVQHAL HMSISLPSFV FGSRTCRASA SATTLMSHEN  540
GADRINIGHE ARRVRCHDGR PTRSRSGQRS CLDGHGVVEI SPSKIPSPRA GVPLLRRRRG  600
CGPATITATD REVDGGDESW SVYTAPIDE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35456	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	9e-31	bHLH family protein