PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g00260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 360aa    MW: 39567 Da    PI: 7.0476
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g00260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52541811128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeelv++yL++kv +  +     i+evdi+++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +g
  Zjn_sc00078.1.g00260.1.am.mk  54 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDINRCEPWELPGAARMGEREWYFFSLRDRKYPTGLRTNRATGAG 133
                                   79************************9777.34***************8888899************************** PP

                           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkd+ev+++ +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  Zjn_sc00078.1.g00260.1.am.mk 134 YWKATGKDREVICTtTGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 181
                                   ***********99878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6443204IPR003441NAC domain
PROSITE profilePS5100558.57654204IPR003441NAC domain
PfamPF023653.3E-2755181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MASSSRTTPL HSPSRWFTRS ISMAMMMHQP QAMGDALWDI LEEEMAAAAG EHGLPPGFRF  60
HPTDEELVTF YLAAKVFNGA CCGVDIAEVD INRCEPWELP GAARMGEREW YFFSLRDRKY  120
PTGLRTNRAT GAGYWKATGK DREVICTTTG ALIGMKKTLV FYKGRAPRGE KTKWVLHEYR  180
LDGDFAAGRR FWKEEWVICR IFHKAVDQYS KMVMSMSPYY HPTDPSSFCF QQEPPHAALP  240
LPNPGICSGL AHALPFHHSL ENHHQGKSNV DTNGLPAASS LDQPNGSGGV NTCDSSVMPM  300
LPAFPSFASV VVTGKAAPHQ QEAGVNAGPP EPPPPTLLDG YIAHSGFLYE MCPPAAPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-495420417165NO APICAL MERISTEM PROTEIN
1ut4_B6e-495420417165NO APICAL MERISTEM PROTEIN
1ut7_A6e-495420417165NO APICAL MERISTEM PROTEIN
1ut7_B6e-495420417165NO APICAL MERISTEM PROTEIN
3swm_A7e-495420420168NAC domain-containing protein 19
3swm_B7e-495420420168NAC domain-containing protein 19
3swm_C7e-495420420168NAC domain-containing protein 19
3swm_D7e-495420420168NAC domain-containing protein 19
3swp_A7e-495420420168NAC domain-containing protein 19
3swp_B7e-495420420168NAC domain-containing protein 19
3swp_C7e-495420420168NAC domain-containing protein 19
3swp_D7e-495420420168NAC domain-containing protein 19
4dul_A6e-495420417165NAC domain-containing protein 19
4dul_B6e-495420417165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612700.0BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663651.11e-151protein CUP-SHAPED COTYLEDON 1 isoform X2
SwissprotQ9S8512e-85NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLC0HG141e-150C0HG14_MAIZE; Protein CUP-SHAPED COTYLEDON 3
STRINGGRMZM2G430522_P011e-150(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-86NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]