PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00078.1.g00160.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 376aa MW: 40338.2 Da PI: 8.2248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00078.1.g00160.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	306	351	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq Zjn_sc00078.1.g00160.1.sm.mkhc 306 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 351 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	300	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-16	303	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.93E-13	304	355	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-15	305	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-10	306	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-13	306	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MFGSPVSKDL NLPVQPPMTS SGLLRYRSAP STMLGELCED FLRAGPLAGS PEAGTDNVFS 60 RFLADHQIRE KPPAPAPTAT HFPNEAAMAS QQQQQMMYHS QQQQQQQMAG VESGLYRTTS 120 SGMEAAGAGV SNLIRQSSSP AGFLNHLNMD DGYTNMLRAG MGVGFRNGSS AATADSPAAA 180 GGGSRLKGQL SFSSRQGSLM SQISEMESEE LGGSSPEAAG GGRGFILGYP MGSGWEDSSS 240 LMTDNMTSGM KRPRDSSEPG QNGLAHQFSL PKTSSEVAAI EKFLQFQDAV PCKIRAKRGC 300 ATHPRSIAER VRRTKISERI RKLQELVPNM DKQTNTSDML DLAVDYIKDL QKQVKVLNEG 360 RANCTCAASK HQQHTG

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MFGSPVSKDL NLPVQPPMTS SGLLRYRSAP STMLGELCED FLRAGPLAGS PEAGTDNVFS  60
RFLADHQIRE KPPAPAPTAT HFPNEAAMAS QQQQQMMYHS QQQQQQQMAG VESGLYRTTS  120
SGMEAAGAGV SNLIRQSSSP AGFLNHLNMD DGYTNMLRAG MGVGFRNGSS AATADSPAAA  180
GGGSRLKGQL SFSSRQGSLM SQISEMESEE LGGSSPEAAG GGRGFILGYP MGSGWEDSSS  240
LMTDNMTSGM KRPRDSSEPG QNGLAHQFSL PKTSSEVAAI EKFLQFQDAV PCKIRAKRGC  300
ATHPRSIAER VRRTKISERI RKLQELVPNM DKQTNTSDML DLAVDYIKDL QKQVKVLNEG  360
RANCTCAASK HQQHTG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804212.1	0.0	transcription factor bHLH130-like
Refseq	XP_025804213.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2T7EX85	0.0	A0A2T7EX85_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QNR1	0.0	A0A3L6QNR1_PANMI; Uncharacterized protein
STRING	Pavir.Ba00676.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-59	bHLH family protein