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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00071.1.g00660.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 628aa MW: 68094.6 Da PI: 9.04 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.3e-52 | 226 | 354 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat Zjn_sc00071.1.g00660.1.am.mk 226 VPPGFRFHPTEEELLNYYLRKKVASQEIDL-DVIRDVDLNKLEPWDIQEecKIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 305 69****************************.9***************953444443456********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk++++ + +g++ktLvfykgrap+g+k+dW+mheyrl Zjn_sc00071.1.g00660.1.am.mk 306 AAGFWKATGRDKAIYN-AVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 354 ****************.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-55 | 220 | 364 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.903 | 226 | 412 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-28 | 227 | 354 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-55 | 400 | 412 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MISMCGIDES PPRIYERRWP RDRCCPAAGA TSAPGRRGLL SHRRVPGPAR PIISRHAPVS 60 LPFRSEFKGD APTPTPTPAK LAQLAAPVRA RMVLSSLADR VKVHEQEGTP PASKVPIGYS 120 GVQINWTWMQ RTNQSGVNRA TRTNTAKDSN QPPLYKDAPF LSCGLRPVCS SSSSGPLSSS 180 PACCCSCTHQ LELNPKNTLN KKRWQTQRLR EKERSMSISV NGQSCVPPGF RFHPTEEELL 240 NYYLRKKVAS QEIDLDVIRD VDLNKLEPWD IQEECKIGSG PQNDWYFFSH KDKKYPTGTR 300 TNRATAAGFW KATGRDKAIY NAVKRIGMRK TLVFYKGRAP HGQKSDWIMH EYRLDDPAAA 360 TATVKLQPSF SFLQSIHLHR STTPPIRPVT AAAASSDAGQ EDGWVVCRVF KKKYHVKESG 420 SGGGGKHGPR HGGGDHGHGS KAAAMHGQGL QYSSSDETLD QILTYMVRSC KQEHEVLSPQ 480 SVGGGAGRPG SRCLGPIETV LGGHRFMKLP PLESPSAATA LPHVPGETAA ASSGGGDDDL 540 HRGGNGITDW AIMDRLVASH LNGQPDPDVP AEDQLCSFDD GGDEGDGAMD GLAFYSAAAT 600 RFLSGGGDDL WNFARSAATS TSTERLIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 223 | 413 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 223 | 413 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 223 | 413 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 223 | 413 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-43 | 223 | 413 | 17 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-43 | 223 | 413 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 223 | 413 | 14 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 213 | LREKER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075081 | 0.0 | KT075081.1 Panicum virgatum secondary wall NAC master switch (SWN2A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140582.1 | 1e-166 | uncharacterized protein LOC100272652 | ||||
Swissprot | Q84WP6 | 1e-109 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A3L6F752 | 1e-168 | A0A3L6F752_MAIZE; NAC domain-containing protein 43 | ||||
STRING | Pavir.J20698.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 2e-96 | NAC family protein |