PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00071.1.g00530.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 61aa    MW: 6877.2 Da    PI: 11.5453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00071.1.g00530.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65.1e-261056248
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                  rien   rqvtf+kRr+g+lKKA ELSvLCda++ +iifs +gkly+
  Zjn_sc00071.1.g00530.1.sm.mk 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDARIGIIIFSAHGKLYD 56
                                  8********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-25159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.492161IPR002100Transcription factor, MADS-box
CDDcd002658.40E-34261No hitNo description
PRINTSPR004043.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ARIGIIIFSA HGKLYDLATT  60
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17161161MEF2C
5f28_B3e-17161161MEF2C
5f28_C3e-17161161MEF2C
5f28_D3e-17161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3704681e-63AK370468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023157970.13e-36MADS-box transcription factor 26 isoform X5
SwissprotA2YQK94e-35MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G84e-35MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A287WYE62e-35A0A287WYE6_HORVV; Uncharacterized protein
TrEMBLA0A287WYF14e-35A0A287WYF1_HORVV; Uncharacterized protein
TrEMBLA0A287WYP64e-35A0A287WYP6_HORVV; Uncharacterized protein
STRINGOPUNC08G01030.13e-35(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-34AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]