PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g03570.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 603aa    MW: 66308.9 Da    PI: 8.2403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g03570.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-174389252
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Zjn_sc00069.1.g03570.1.am.mk 43 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 89
                                  69****998.**********843...6*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.79843101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-264396IPR001471AP2/ERF domain
SMARTSM003803.8E-2443103IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-174395IPR016177DNA-binding domain
PfamPF008478.9E-124389IPR001471AP2/ERF domain
PRINTSPR003671.5E-94455IPR001471AP2/ERF domain
CDDcd000181.51E-154478No hitNo description
PRINTSPR003671.5E-96682IPR001471AP2/ERF domain
PROSITE profilePS5096610.385405435IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-4405433IPR007527Zinc finger, SWIM-type
SuperFamilySSF578507.06E-6505569No hitNo description
Gene3DG3DSA:3.30.40.109.0E-10507570IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500899.627511562IPR001841Zinc finger, RING-type
CDDcd001620.00864511563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MPDSDVTSPP APSPLGTVEK RGCRRGGNGN SGCGGGSSRR HPTYRGVRMR AWGKWVSEIR  60
EPRKKSRIWL GTFPTPEMAA RAHDAAALVV KGPAAAAASR AAAMDMDDGH VGGATMPAST  120
LSDTSEQQRG QLAQGQAVDD DEELEEIVEL PPVDEECFAE DDLTFRTPFH VDSDVAQPWY  180
EMAWTAQAGV AAQDYEMVVP GLEQDHRLCT LTDGNEVFSG FVKGLNRSDR KMCGKREIPF  240
WFWLCYERIG SWSMQKHRVV RASPPGPFRQ PTRAARMLRL LLLLRSAVIL TSARSHRPRH  300
STYPSERARG PYLADQQLRP VSRRRSTYAT NEASIDDPEL TSMEPSAAVP PPSTAAAAAA  360
AEEATEVSTR RVANRIIRAL QQRELRLLHR AGADFFVLGA TGNVYTVTLS TTPACTCPDP  420
AAPCKHILFV LLRVLGLSLD EACVWRESLR PCQVARLVGA PTRPDALAGA RARERFHQLW  480
SARGGDSKPP PEGRRREEEA SSARGLDGAA CPVCLEDLEV PAQQGQAALL TCRTCRNAVH  540
AECFARWKRS RARRAATCVV CRSRWRMPRR EREERQQYMN LAAYTNDDGD DAMQGDDGGL  600
CAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-123495567Ethylene-responsive transcription factor ERF096
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745753e-57EU974575.1 Zea mays clone 453357 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-19ERF family protein