PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00069.1.g03350.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 360aa MW: 39313.7 Da PI: 8.4916

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00069.1.g03350.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.5	1.4e-32	54	215	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 lp+G++F+Ptd+el+ e+L++kv+ + ++++ i+ +i++++P++Lp ++++ + +fF++ +k+y+tg Zjn_sc00069.1.g03350.1.sm.mk 54 LPAGVKFDPTDQELI-EHLEAKVRPGTaaapshplIDEFIPtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTG 132 799**********.99**999777775553333333776646******.455566799********* PP NAM 72 krknra.........................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmhe 125 +rk+r+ ++ +W++tgk+++v++ g++ g+kk+Lv+y g+++k++kt+Wvmh+ Zjn_sc00069.1.g03350.1.sm.mk 133 TRKRRKiqppsaatsssssapaahqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRKPQKTNWVMHQ 212 *88***************9998755789********.9999******5547999999****** PP NAM 126 yrl 128 y+l Zjn_sc00069.1.g03350.1.sm.mk 213 YHL 215 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.15E-35	46	234	IPR003441	NAC domain
PROSITE profile	PS51005	29.085	54	234	IPR003441	NAC domain
Pfam	PF02365	1.5E-15	55	215	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDGSASTAAI GSGGGGGHHI PRLGIQEQRK YMSESSCCPR CGHKINRLLD WVGLPAGVKF 60 DPTDQELIEH LEAKVRPGTA AAPSHPLIDE FIPTIEGEDG ICYTHPEKLP GLTKDGLSRH 120 FFHRPSKAYT TGTRKRRKIQ PPSAATSSSS SAPAAHQQQQ QQQRSETRWH KTGKTRPVVV 180 AGRQRGCKKI LVLYTNFGKH RKPQKTNWVM HQYHLGEAEE EREGELVVSK IFYQTQPRQC 240 GVAEPSASSS APTVEMSDHA AAAVPVATSS GNAGVAFQGS AVGIDEFNFA QFRSSFEEED 300 GRPHQPEKFD GRRTSGLEEV IMGCTSRRSK GTETSGGGSK ASTDWQYPSF WPSDSQDHHG

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDGSASTAAI GSGGGGGHHI PRLGIQEQRK YMSESSCCPR CGHKINRLLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRPGTA AAPSHPLIDE FIPTIEGEDG ICYTHPEKLP GLTKDGLSRH  120
FFHRPSKAYT TGTRKRRKIQ PPSAATSSSS SAPAAHQQQQ QQQRSETRWH KTGKTRPVVV  180
AGRQRGCKKI LVLYTNFGKH RKPQKTNWVM HQYHLGEAEE EREGELVVSK IFYQTQPRQC  240
GVAEPSASSS APTVEMSDHA AAAVPVATSS GNAGVAFQGS AVGIDEFNFA QFRSSFEEED  300
GRPHQPEKFD GRRTSGLEEV IMGCTSRRSK GTETSGGGSK ASTDWQYPSF WPSDSQDHHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020399940.1	1e-145	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-105	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A3L6DFR4	1e-149	A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
STRING	GRMZM2G115721_P01	1e-167	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-97	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]