PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g01780.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 427aa    MW: 45681.2 Da    PI: 9.2307
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g01780.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.41.2e-96434272374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse.lykalppsetsekn..sseela 79 
                                   ++l+++cA+ ++ gdl++a+++   l   asp +d+  Rla yf++ALa r+  ++++ ++  l +s+++        +  
  Zjn_sc00069.1.g01780.1.am.mk  43 RDLIMACADLLQRGDLQAAHHAAGVLLSAASPGADAADRLAYYFARALALRVDAKTTGrVAPGLLASSSAAAAaaRPASSG 123
                                   6799************************************************99554404444444443333323555666 PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskee 157
                                   a+ +f+++ P+l+f+hltaNqaIl+aveg+ r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++++
  Zjn_sc00069.1.g01780.1.am.mk 124 AYLAFNQIAPLLRFAHLTANQAILDAVEGAGRIHILDLDAAHGVQWPPLLQAIADRAeqgAGPPEVRITGAGA----DRDT 200
                                   7777*****************************************************88888***********....9*** PP

                          GRAS 158 leetgerLakfAeelgvpfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                                   l +tg+rL+ fA+++++pf+f++l             +++++++    +L+++p+E+laVn+v+ lh+l   + +l     
  Zjn_sc00069.1.g01780.1.am.mk 201 LLRTGSRLRAFARSIQLPFRFTPLllscasshqevagASTTTDTSLSTTLDLHPDETLAVNCVMFLHKLG-GPEEL----A 276
                                   ************************99998888876644444444456789*******************8.44444....5 PP

                          GRAS 226 evLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                                   ++Lk vk + P vv+++e+e          +  +r++ al++ysa+f++lea++p+ s+er  vE+e+lgrei+ +v  +g
  Zjn_sc00069.1.g01780.1.am.mk 277 AFLKWVKAMAPAVVTIAEREppgGGWdRVDEMPRRVAVALDHYSAVFEALEATVPPGSRERLLVEQEVLGREIEAAVGSSG 357
                                   6*******************654333244699**********************************************999 PP

                          GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    +     + le+W ++ ++aGF+p pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+s+S+W+
  Zjn_sc00069.1.g01780.1.am.mk 358 GR---WWRGLERWGAAARAAGFTPRPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSISSWQ 427
                                   87...7899***************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.66516406IPR005202Transcription factor GRAS
PfamPF035144.3E-9443427IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MHATFLIHPP ILLASHQRRR RVSRRNGNTT TRGAVLEAVP STRDLIMACA DLLQRGDLQA  60
AHHAAGVLLS AASPGADAAD RLAYYFARAL ALRVDAKTTG RVAPGLLASS SAAAAAARPA  120
SSGAYLAFNQ IAPLLRFAHL TANQAILDAV EGAGRIHILD LDAAHGVQWP PLLQAIADRA  180
EQGAGPPEVR ITGAGADRDT LLRTGSRLRA FARSIQLPFR FTPLLLSCAS SHQEVAGAST  240
TTDTSLSTTL DLHPDETLAV NCVMFLHKLG GPEELAAFLK WVKAMAPAVV TIAEREPPGG  300
GWDRVDEMPR RVAVALDHYS AVFEALEATV PPGSRERLLV EQEVLGREIE AAVGSSGGRW  360
WRGLERWGAA ARAAGFTPRP LSAFAVSQAR LLLRLHYPSE GYLVQEARGA CFLGWQTRPL  420
LSISSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-484942626378Protein SCARECROW
5b3h_A4e-484942625377Protein SCARECROW
5b3h_D4e-484942625377Protein SCARECROW
5hyz_A3e-487042731375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.10.0protein MONOCULM 1-like
RefseqXP_025810769.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-178MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A3L6PE740.0A0A3L6PE74_PANMI; Protein MONOCULM 1-like
STRINGSb10g023950.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-73GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]