PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00069.1.g01610.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 485aa MW: 50797.4 Da PI: 10.1026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00069.1.g01610.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.4	1.1e-07	444	470	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++e L+el+P + Zjn_sc00069.1.g01610.1.am.mk 444 SHSLAERARREKINARMELLKELVPGC 470 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-7	438	472	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-5	438	472	No hit	No description
PROSITE profile	PS50888	11.166	440	485	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	443	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-5	444	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDHDGRPAVR KPQVRLILTT GPVLSQAHTT ASDWRSPDSG DRTQRPKDPL HGPVATGADC 60 VASWRPALAD RCWLAQRCAA PGPGAWPEKG TVAAGLFRSA HTEYQPMATR ARHDGTGGPP 120 RDEWFATSWT GWMDRDEWQH GTKTGGGLFA TLNRWAVANR QLEMPPRRPA GAWAPSAVAR 180 RAPRGPCPSG RRDVVKKILA CWTSLASCFT GHRGPPLQPA GNAHSASLLP STPTPPHLSA 240 AASYKCRHCL APPLPPPPPF LSSRTPPTSP ASAAPMHHPS PPPQEPPVSR AEIQALIPAS 300 SSAEPSSATS TTTASGGGGG SFTALLGLPT SQAMELLLPG AAPPAPAPAP AFPSDPHLGD 360 CAASFSAFAS LSSPSPTPPP PPPPPVAANA KRKADPADRS SKVGKAAKKG KTAADETKPA 420 GGDGEDEKPA YVHVRARRGQ ATDSHSLAER ARREKINARM ELLKELVPGC SKVCGCYHLP 480 FTPHV

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDHDGRPAVR KPQVRLILTT GPVLSQAHTT ASDWRSPDSG DRTQRPKDPL HGPVATGADC  60
VASWRPALAD RCWLAQRCAA PGPGAWPEKG TVAAGLFRSA HTEYQPMATR ARHDGTGGPP  120
RDEWFATSWT GWMDRDEWQH GTKTGGGLFA TLNRWAVANR QLEMPPRRPA GAWAPSAVAR  180
RAPRGPCPSG RRDVVKKILA CWTSLASCFT GHRGPPLQPA GNAHSASLLP STPTPPHLSA  240
AASYKCRHCL APPLPPPPPF LSSRTPPTSP ASAAPMHHPS PPPQEPPVSR AEIQALIPAS  300
SSAEPSSATS TTTASGGGGG SFTALLGLPT SQAMELLLPG AAPPAPAPAP AFPSDPHLGD  360
CAASFSAFAS LSSPSPTPPP PPPPPVAANA KRKADPADRS SKVGKAAKKG KTAADETKPA  420
GGDGEDEKPA YVHVRARRGQ ATDSHSLAER ARREKINARM ELLKELVPGC SKVCGCYHLP  480
FTPHV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	3e-81	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP46077	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-21	bHLH family protein