 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00069.1.g01520.1.sm.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
C3H |
| Protein Properties |
Length: 298aa MW: 31144.6 Da PI: 10.1222 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00069.1.g01520.1.sm.mkhc | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.9 | 6.4e-07 | 32 | 56 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C f+ t C++G++C+F H
Zjn_sc00069.1.g01520.1.sm.mkhc 32 KSKPCTKFFSTAGCPFGASCHFLHN 56
7789********************7 PP
|
| 2 | zf-CCCH | 20.1 | 1.2e-06 | 98 | 123 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck G++C+FaHg+
Zjn_sc00069.1.g01520.1.sm.mkhc 98 KTRMCNKYNTAEGCKWGSKCHFAHGE 123
89**********************96 PP
|
| 3 | zf-CCCH | 35.3 | 1.9e-11 | 264 | 289 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +G+rC+FaHg+
Zjn_sc00069.1.g01520.1.sm.mkhc 264 FKTKLCENFNK-GSCTFGERCHFAHGE 289
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.915 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.3 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.28E-6 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-8 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.4E-5 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.9E-14 | 93 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-8 | 95 | 127 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.727 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.97 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 1.9E-12 | 165 | 237 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.1E-8 | 167 | 237 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 9.6E-14 | 168 | 236 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 13.586 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 7.7E-9 | 170 | 233 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-16 | 261 | 295 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.474 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-8 | 263 | 294 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.4E-7 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.0E-9 | 264 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MDSGRKRTAP EGANGAKRPK ELETSQMGVG SKSKPCTKFF STAGCPFGAS CHFLHNFPGG 60
YQAVAKMTNL GGPPVPSPMG RMPMGPGVPD GPPTPSVKTR MCNKYNTAEG CKWGSKCHFA 120
HGERELGKPM PLNNSVGGPP MGPGPNGHFM PPPMPVPDMV PPSTFGASAT AKISVDAFLA 180
GGIIGKGGIN TKHISRVTGA KLAIRDNEAD PNLKNIELEG TFDQIKHASA MVTELIVRIG 240
GKAPQQTKNN TGRGSHAGGP GSNFKTKLCE NFNKGSCTFG ERCHFAHGEG ELRKPAAA
|
