PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g01520.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 298aa    MW: 31144.6 Da    PI: 10.1222
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g01520.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-073256226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                    k ++C  f+ t  C++G++C+F H 
  Zjn_sc00069.1.g01520.1.sm.mkhc 32 KSKPCTKFFSTAGCPFGASCHFLHN 56
                                    7789********************7 PP
2zf-CCCH20.11.2e-0698123227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     kt+ C+ +     Ck G++C+FaHg+
  Zjn_sc00069.1.g01520.1.sm.mkhc  98 KTRMCNKYNTAEGCKWGSKCHFAHGE 123
                                     89**********************96 PP
3zf-CCCH35.31.9e-11264289127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +kt+lC +f + G C +G+rC+FaHg+
  Zjn_sc00069.1.g01520.1.sm.mkhc 264 FKTKLCENFNK-GSCTFGERCHFAHGE 289
                                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9153058IPR000571Zinc finger, CCCH-type
SMARTSM003560.33057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-63158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-83256IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-53256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-1493128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-895127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.72796124IPR000571Zinc finger, CCCH-type
SMARTSM003560.9796123IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.9E-12165237IPR004088K Homology domain, type 1
SMARTSM003221.1E-8167237IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.6E-14168236IPR004088K Homology domain, type 1
PROSITE profilePS5008413.586168232IPR004088K Homology domain, type 1
PfamPF000137.7E-9170233IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-16261295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474263290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8263294IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7263289IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9264289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDSGRKRTAP EGANGAKRPK ELETSQMGVG SKSKPCTKFF STAGCPFGAS CHFLHNFPGG  60
YQAVAKMTNL GGPPVPSPMG RMPMGPGVPD GPPTPSVKTR MCNKYNTAEG CKWGSKCHFA  120
HGERELGKPM PLNNSVGGPP MGPGPNGHFM PPPMPVPDMV PPSTFGASAT AKISVDAFLA  180
GGIIGKGGIN TKHISRVTGA KLAIRDNEAD PNLKNIELEG TFDQIKHASA MVTELIVRIG  240
GKAPQQTKNN TGRGSHAGGP GSNFKTKLCE NFNKGSCTFG ERCHFAHGEG ELRKPAAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.11e-178zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-165C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3L6S1110.0A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.J02805.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-43C3H family protein