PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00068.1.g02980.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | DBB | ||||||||
Protein Properties | Length: 296aa MW: 31502.2 Da PI: 4.8315 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.6e-06 | 9 | 52 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C ++ +++ C ++ lC C H+ H+++pl Zjn_sc00068.1.g02980.1.am.mkhc 9 NCGVCGGERAAVLCCADEAALCSACDRRVHRAnklagkHRRIPL 52 7*****************************77999999999886 PP | |||||||
2 | zf-B_box | 22 | 3.3e-07 | 68 | 107 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++ + fC +++ lC+dC + +H+ H Zjn_sc00068.1.g02980.1.am.mkhc 68 PLCDVCKLRRGLVFCVEDRAILCPDCDEPIHSAndltakH 107 78*****999*********************655565555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.911 | 5 | 52 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-10 | 5 | 52 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 9 | 52 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.84E-6 | 10 | 52 | No hit | No description |
PROSITE profile | PS50119 | 9.03 | 65 | 112 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.8E-13 | 65 | 112 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.27E-7 | 68 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSPGTMRVNC GVCGGERAAV LCCADEAALC SACDRRVHRA NKLAGKHRRI PLLHPSADAS 60 SDDNTTGPLC DVCKLRRGLV FCVEDRAILC PDCDEPIHSA NDLTAKHSRF LLVGAKLSTA 120 LGDEAPSSPD CGGGGESDGV AAACAQDSST DRSPVLECSD NNGSGGGAMI SDYLTNICPG 180 WRVDDLLFDE SPFSAKPGRD DQHVTSTDAD LFDVVAGRSE KRVLWGTSWT GDLGFEEVPT 240 AMAAPTTAAR PITNKQGRAR ETYWKNTMDN DSDVFAVPEF TPPPAKKARP SSFWCF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812143.1 | 1e-109 | B-box zinc finger protein 20-like | ||||
TrEMBL | A0A2T7DU71 | 1e-108 | A0A2T7DU71_9POAL; Uncharacterized protein | ||||
STRING | Si006993m | 1e-103 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12100 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 7e-45 | salt tolerance homolog2 |