PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g02320.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 482aa    MW: 52228.1 Da    PI: 8.1562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g02320.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52521801128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat
  Zjn_sc00067.1.g02320.1.am.mk  52 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 131
                                   69****************************.9***************952444443456********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   ++g+Wkatg+dk+++s  ++ +g++ktLvfykgrap+g+k+dW+mheyrl
  Zjn_sc00067.1.g02320.1.am.mk 132 AAGFWKATGRDKAIYS-CTRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 180
                                   ****************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5346182IPR003441NAC domain
PROSITE profilePS5100551.48352282IPR003441NAC domain
PfamPF023651.0E-2753180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVPLRLSRAL FRMPRPWPLI VYLPLSPRFF LPGPDGGDHP PRSRPIALLS AVPPGFRFHP  60
TEEELLTYYL KKKVASERID LDVIRDVDLN KLEPWDIQEK CRIGSGPQND WYFFSHKDKK  120
YPTGTRTNRA TAAGFWKATG RDKAIYSCTR RIGMRKTLVF YKGRAPHGQK SDWIMHEYRL  180
DDVQTPAAGV DPYYPSPPPP PALELGLGVP GLLVEISMAG GEVVGLGSPW KATEFAHQQD  240
HQTCVSKGQP KTAGRVRMRG GAAAGDQAAQ EEGWVICRVF KKKNLVLHHG QSSGGGGTTT  300
VATAASKTAA ATTMESSPTS NGSSVTVTDQ VKAQLLHSAS DDALDHILQY IGRSCHTNNE  360
QDTKPPPALQ LDHHLAATTA TACPAGSSFY GRFMKLPPLE HVGAGLLPNP AGYAADASGI  420
ADWDSLDRLA AYEFNGLSDA SKNMVAFLEE PNAAAGTGDG DLWSLARSSV SSLHPDLTMN  480
NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-435218015140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750801e-179KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810838.11e-160NAC domain-containing protein 43-like
TrEMBLA0A2S3HM671e-159A0A2S3HM67_9POAL; Uncharacterized protein
STRINGSb10g002120.11e-151(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.12e-74NAC domain containing protein 12