PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00065.1.g02200.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 429aa MW: 47342.6 Da PI: 8.8883

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00065.1.g02200.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.8e-56	111	236	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL++kv++ +++ ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat+sg Zjn_sc00065.1.g02200.1.am.mk 111 LPPGFRFHPTDEELVTYYLTRKVSDFAFTT-RAIADVDLNKCEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSG 190 79***********************999.89***********999999*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkdke+++ g lvg+kktLvfy+grapkgekt+Wvmheyrl Zjn_sc00065.1.g02200.1.am.mk 191 YWKTTGKDKEIFH-CGMLVGMKKTLVFYRGRAPKGEKTSWVMHEYRL 236 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	108	257	IPR003441	NAC domain
PROSITE profile	PS51005	60.287	111	257	IPR003441	NAC domain
Pfam	PF02365	5.1E-29	112	236	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MACKLPRAWC RPGLRYPPCR WVRGGWSWLE TPPARTGVSL RSMLLSTAAL FLPRPVAVAV 60 ADNPCRRFLG PRLILCLCAC AFLALPVYIY APLPEARAAA IAASCRLCEG LPPGFRFHPT 120 DEELVTYYLT RKVSDFAFTT RAIADVDLNK CEPWDLPSKA SMGEKEWYFF SMRDRKYPTG 180 IRTNRATDSG YWKTTGKDKE IFHCGMLVGM KKTLVFYRGR APKGEKTSWV MHEYRLQNKF 240 PYKPNKEEWV VCRVFKKCQI IKMRPPTDSP TMGSPCHDGN QSLGELGELD VSSILGSLTP 300 ASMHTSSSSP GEGFGHRMDM NAYLSWMAAA NQGAVAAATA AMLPWATAPG LFSNVFAAPS 360 PLGQKSLPYA GCSSSQPRDI SAVVANIGGD HALFGSSVAK VDMECDRQQQ APTPPEQQPG 420 MDESTWRAF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MACKLPRAWC RPGLRYPPCR WVRGGWSWLE TPPARTGVSL RSMLLSTAAL FLPRPVAVAV  60
ADNPCRRFLG PRLILCLCAC AFLALPVYIY APLPEARAAA IAASCRLCEG LPPGFRFHPT  120
DEELVTYYLT RKVSDFAFTT RAIADVDLNK CEPWDLPSKA SMGEKEWYFF SMRDRKYPTG  180
IRTNRATDSG YWKTTGKDKE IFHCGMLVGM KKTLVFYRGR APKGEKTSWV MHEYRLQNKF  240
PYKPNKEEWV VCRVFKKCQI IKMRPPTDSP TMGSPCHDGN QSLGELGELD VSSILGSLTP  300
ASMHTSSSSP GEGFGHRMDM NAYLSWMAAA NQGAVAAATA AMLPWATAPG LFSNVFAAPS  360
PLGQKSLPYA GCSSSQPRDI SAVVANIGGD HALFGSSVAK VDMECDRQQQ APTPPEQQPG  420
MDESTWRAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	111	257	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	111	257	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	111	257	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	111	257	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-55	111	257	20	168	NAC domain-containing protein 19
3swm_B	5e-55	111	257	20	168	NAC domain-containing protein 19
3swm_C	5e-55	111	257	20	168	NAC domain-containing protein 19
3swm_D	5e-55	111	257	20	168	NAC domain-containing protein 19
3swp_A	5e-55	111	257	20	168	NAC domain-containing protein 19
3swp_B	5e-55	111	257	20	168	NAC domain-containing protein 19
3swp_C	5e-55	111	257	20	168	NAC domain-containing protein 19
3swp_D	5e-55	111	257	20	168	NAC domain-containing protein 19
4dul_A	5e-55	111	257	17	165	NAC domain-containing protein 19
4dul_B	5e-55	111	257	17	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363171	0.0	AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795943.1	1e-179	protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A1E5WJW1	0.0	A0A1E5WJW1_9POAL; Protein CUP-SHAPED COTYLEDON 2
STRING	Pavir.Ib03976.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	5e-91	NAC domain containing protein 58