PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00065.1.g01950.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 260aa    MW: 28819.5 Da    PI: 9.354
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00065.1.g01950.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09118161347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    WT  E+ l++ + +++G g+W+ I+  +  +Rt+ ++  + qk+
  Zjn_sc00065.1.g01950.1.am.mk 118 LWTHHEHMLFLSGLRLYGCGNWRDISMLIE-TRTPLEVSIHAQKF 161
                                   5*****************************.*******9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.248114166IPR017884SANT domain
SMARTSM007172.0E-6115164IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.0E-8115164IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-6116154IPR009057Homeodomain-like
PfamPF002493.8E-7118160IPR001005SANT/Myb domain
CDDcd001671.57E-7119162No hitNo description
SuperFamilySSF466891.87E-11119166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVPGQVTPKP NGVWSRPEIK TMKSLIRRHN NDVNNNGKDI VDLLQERFHY KEKHQVTDLY  60
LDIVTEMMQT LQLQQGSGTA SNINNPPPPV EEPAAMDNAA VAVVPQPGPA WYPARRRLWT  120
HHEHMLFLSG LRLYGCGNWR DISMLIETRT PLEVSIHAQK FFRKLGKAAR TQRSSVNAKP  180
CSQNPSKGKA LATTDGGYNL GDSQSSSQLA AMNTQAKVSS PFLYHVDQAS SSGGSSQAAW  240
TGDQQNFVPD ELLEVFAQKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3526734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-12Homeodomain-like transcriptional regulator