PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00065.1.g01610.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 771aa MW: 82068.9 Da PI: 8.045

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00065.1.g01610.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	630	669	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Zjn_sc00065.1.g01610.1.am.mk 630 RRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 669 8****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.70E-13	606	673	No hit	No description
PROSITE profile	PS50888	14.526	619	668	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-13	625	674	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	630	677	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-10	630	669	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-15	630	680	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MLFSSLPTEV DRLRIRRATN SRPARLRPHR GAGQRTSGDG DELDGGSAAQ RSDDGDQLDG 60 SSAARLSSDG TSWMAARLST DGTSWTAAAT AQRRSRRGAA RRRHRQGAAR RRSLRGAAWR 120 RLDDARPGCE STTLPDEEAR SDGCLDENGG EGRLDLFRGQ APNDGTGHFH GDTIDRSAPE 180 LSAPCKLDLL GIHANAKKVR SSSSTRRTGS MACSPDPYPS SLRSLSLGLC RQESSSLHQP 240 TMSLYSCLKA TAGPLRPSSS FSSSTAYSSS HIEKEIQTPA GEHQNLGNQR AMNQFVPDWS 300 NDMGDNSRPL GEDDDLIELL WCNGHVVMQS QTNRKLPPRP EKPGLGPPAA AAAAATAAPV 360 AQEDEAGLWF PFALADSLDK DIFSDFFCDA PMVAPVAAPA TAVEAGKSPC RDVPVPPPED 420 GMRGAVSEAP PCDLMPPPKS TPHVSCSRQQ TISLGDGDHA DDLSELVRAG AAGSGRKAGT 480 EAGAVSSSML SAIGSSICGS NQVLVPRAVS VPDTAYALPS AVGSANANAS GRCHETTVAS 540 SSGRSNGCFG TTTTEPTSTS NRSSKRKRLD TEDSESPSED AEWESAAAAR KLPPKMATAR 600 RSRAAEVHNL SERVRGSCPF LPSLTRVFPR RRDRINEKMR ALQELIPHCN KTDKASMLDE 660 AIEYLKSLQL QVQMMWMGSG IAAPPVMFPG VHQYLPRMGV GMGAAAAMPR MPFMAPQAVV 720 PSPPVNPVPL SPGQMPAVGI TEPYAHYLGV NHLQPTPTQV RRAPPQFLIA F

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MLFSSLPTEV DRLRIRRATN SRPARLRPHR GAGQRTSGDG DELDGGSAAQ RSDDGDQLDG  60
SSAARLSSDG TSWMAARLST DGTSWTAAAT AQRRSRRGAA RRRHRQGAAR RRSLRGAAWR  120
RLDDARPGCE STTLPDEEAR SDGCLDENGG EGRLDLFRGQ APNDGTGHFH GDTIDRSAPE  180
LSAPCKLDLL GIHANAKKVR SSSSTRRTGS MACSPDPYPS SLRSLSLGLC RQESSSLHQP  240
TMSLYSCLKA TAGPLRPSSS FSSSTAYSSS HIEKEIQTPA GEHQNLGNQR AMNQFVPDWS  300
NDMGDNSRPL GEDDDLIELL WCNGHVVMQS QTNRKLPPRP EKPGLGPPAA AAAAATAAPV  360
AQEDEAGLWF PFALADSLDK DIFSDFFCDA PMVAPVAAPA TAVEAGKSPC RDVPVPPPED  420
GMRGAVSEAP PCDLMPPPKS TPHVSCSRQQ TISLGDGDHA DDLSELVRAG AAGSGRKAGT  480
EAGAVSSSML SAIGSSICGS NQVLVPRAVS VPDTAYALPS AVGSANANAS GRCHETTVAS  540
SSGRSNGCFG TTTTEPTSTS NRSSKRKRLD TEDSESPSED AEWESAAAAR KLPPKMATAR  600
RSRAAEVHNL SERVRGSCPF LPSLTRVFPR RRDRINEKMR ALQELIPHCN KTDKASMLDE  660
AIEYLKSLQL QVQMMWMGSG IAAPPVMFPG VHQYLPRMGV GMGAAAAMPR MPFMAPQAVV  720
PSPPVNPVPL SPGQMPAVGI TEPYAHYLGV NHLQPTPTQV RRAPPQFLIA F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982350.1	0.0	transcription factor PIF1 isoform X1
TrEMBL	K4A8A4	0.0	K4A8A4_SETIT; Uncharacterized protein
STRING	Si035110m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3107	36	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-30	phytochrome interacting factor 3