PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00065.1.g01000.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 468aa    MW: 49726.8 Da    PI: 10.104
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00065.1.g01000.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.51.4e-30297353158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   d+p+YVN+KQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  Zjn_sc00065.1.g01000.1.am.mk 297 DAPIYVNPKQYEGILRRRRARAKAERENRL-VKGRKPYLHESRHLHAMRRARGSGGRF 353
                                   68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-34295356IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.186296356IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-27299353IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-22299321IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-22330353IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MPPHALHVGQ QFGTPPTPGY GALPSCGVPD FIPSPTGYGA PGLGALGPNT PPQQAAESST  60
SGAPATHALG SVDADLVSSG SGALSGLARP NSDPSRRGPW PVLTMSCRPA RHDKARRATG  120
PRHETLPLTS LRSCVAPSSL ALLARLEIPF KARRGKATMM SFKNHQGFAA LNQASHGSGA  180
PLPWWAGPQL LYGEPAPLSP EETRREGQFE VVPGAQSSPD PAPPSAKRAA APEVLKFSVF  240
QSQGDPEAGG KGDKAPDHST IIALQSPFPE YNGRFEIGMG QSMSGGRMLL PLHAPADAPI  300
YVNPKQYEGI LRRRRARAKA ERENRLVKGR KPYLHESRHL HAMRRARGSG GRFLNTKKAG  360
QGKETSAKEG NKAAPNARPG SFSPRLEQGN NQHSCHSRSS VSSGLSGSEA SSVYEHDDTD  420
HYNSSIEHLR TPFFTPQPSI MDGEHGAATI PSFKWATGYG CCEQLLRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A8e-17297354260HAPB protein
4g92_A8e-17297354260HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796559.11e-113nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.11e-113nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.11e-113nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9RWX31e-127A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ia01146.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.15e-21nuclear factor Y, subunit A6