PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00064.1.g00260.1.es.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28628.5 Da PI: 9.6947 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 83 | 128 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Zjn_sc00064.1.g00260.1.es.mkhc 83 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 128 799***********************6.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.39 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.55E-19 | 82 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-12 | 82 | 132 | No hit | No description |
Pfam | PF00010 | 1.2E-10 | 83 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-19 | 83 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-16 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEATSRASNT NLHPAATANE GMLSFSSAPT TRPAKSESDH SDLDASVREV ESSRVVAPPP 60 PEAEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS KMDKASLLGD 120 AISYINELRG KLTALESDKE TMQSQIEALK KERDARPAPQ AGGFGHDAGP RCHAVEIDAK 180 ILGLEAMIRV QCHKRNHPSA RLMTALRELD LDVCHASVSV VKDLMIQQVA VKMASRIYSQ 240 DQLNAVLYSR LAEPGSVVGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
5gnj_B | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
5gnj_E | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
5gnj_F | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
5gnj_G | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
5gnj_I | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
5gnj_M | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
5gnj_N | 4e-35 | 77 | 156 | 2 | 81 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 72 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00085 | PBM | Transfer from AT5G46760 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF061107 | 0.0 | AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698381.1 | 1e-167 | LOW QUALITY PROTEIN: transcription factor MYC2-like | ||||
Swissprot | Q336P5 | 1e-155 | MYC2_ORYSJ; Transcription factor MYC2 | ||||
TrEMBL | A0A1E5W733 | 1e-166 | A0A1E5W733_9POAL; Transcription factor MYC2 | ||||
STRING | Pavir.J38781.1.p | 1e-170 | (Panicum virgatum) | ||||
STRING | Si039973m | 1e-167 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 8e-73 | bHLH family protein |
Publications ? help Back to Top | |||
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