PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00063.1.g03420.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 556aa MW: 60880.2 Da PI: 8.4213

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00063.1.g03420.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.1	2.9e-52	171	299	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat Zjn_sc00063.1.g03420.1.am.mk 171 VPPGFRFHPTEEELLNYYLRKKVASQEIDL-DVIRDVDLNKLEPWDIQEkcKIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 250 69**************************.9***********952444443456****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk++++ + +g++ktLvfykgrap+g+k+dW+mheyrl Zjn_sc00063.1.g03420.1.am.mk 251 AAGFWKATGRDKAIYN-AVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 299 ************.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-58	165	333	IPR003441	NAC domain
PROSITE profile	PS51005	56.794	171	333	IPR003441	NAC domain
Pfam	PF02365	7.7E-28	172	299	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009809	Biological Process	lignin biosynthetic process
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0009901	Biological Process	anther dehiscence
GO:0010047	Biological Process	fruit dehiscence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MIGQSSLHVR WLPLQSLGWG YRPAIDEALH NCRAFFFPSR VPVRHQTLPH CTDSRNMSRR 60 ERERERESQQ HGMMAISFMD GAVDKSTDGS SPGFFSALLD YIRPHLSSSA TSFFFLLLLQ 120 LFFLPLARTH TSCYRAQPRT SRTRKKQCIY THRVREKERS MSISVNGQSC VPPGFRFHPT 180 EEELLNYYLR KKVASQEIDL DVIRDVDLNK LEPWDIQEKC KIGSGPQNDW YFFSHKDKKY 240 PTGTRTNRAT AAGFWKATGR DKAIYNAVKR IGMRKTLVFY KGRAPHGQKS DWIMHEYRLD 300 DPADAASTVT AAAVASSDAG QEDGWVVCRV FKKKHHVKES GSGSGGGKHG HHHGGGGDHG 360 SKMAAAHGHG LQYSSSDDAL DQILQYMGRS CKQEHEILSP SAGGSGRPAG SRCHLRPIET 420 VLGEHGFMKL PPLESPSAAT TALTPPPPHV PGEAAASSGG DDLLLHRGGN GITDWAMMDR 480 LVASHLNGQA PDAPVDHHLC SFDGGDDDAG SADGLAFYSA AATRLLSGGS GSGASDDDLW 540 SFARSAASSS TERLIG

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MIGQSSLHVR WLPLQSLGWG YRPAIDEALH NCRAFFFPSR VPVRHQTLPH CTDSRNMSRR  60
ERERERESQQ HGMMAISFMD GAVDKSTDGS SPGFFSALLD YIRPHLSSSA TSFFFLLLLQ  120
LFFLPLARTH TSCYRAQPRT SRTRKKQCIY THRVREKERS MSISVNGQSC VPPGFRFHPT  180
EEELLNYYLR KKVASQEIDL DVIRDVDLNK LEPWDIQEKC KIGSGPQNDW YFFSHKDKKY  240
PTGTRTNRAT AAGFWKATGR DKAIYNAVKR IGMRKTLVFY KGRAPHGQKS DWIMHEYRLD  300
DPADAASTVT AAAVASSDAG QEDGWVVCRV FKKKHHVKES GSGSGGGKHG HHHGGGGDHG  360
SKMAAAHGHG LQYSSSDDAL DQILQYMGRS CKQEHEILSP SAGGSGRPAG SRCHLRPIET  420
VLGEHGFMKL PPLESPSAAT TALTPPPPHV PGEAAASSGG DDLLLHRGGN GITDWAMMDR  480
LVASHLNGQA PDAPVDHHLC SFDGGDDDAG SADGLAFYSA AATRLLSGGS GSGASDDDLW  540
SFARSAASSS TERLIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-47	168	339	17	174	NAC domain-containing protein 19
3swm_B	1e-47	168	339	17	174	NAC domain-containing protein 19
3swm_C	1e-47	168	339	17	174	NAC domain-containing protein 19
3swm_D	1e-47	168	339	17	174	NAC domain-containing protein 19
3swp_A	1e-47	168	339	17	174	NAC domain-containing protein 19
3swp_B	1e-47	168	339	17	174	NAC domain-containing protein 19
3swp_C	1e-47	168	339	17	174	NAC domain-containing protein 19
3swp_D	1e-47	168	339	17	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00321	DAP	Transfer from AT2G46770	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075081	0.0	KT075081.1 Panicum virgatum secondary wall NAC master switch (SWN2A) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164672.1	1e-176	NAC domain-containing protein 43-like
Swissprot	Q84WP6	1e-116	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A3B6RKJ3	1e-180	A0A3B6RKJ3_WHEAT; Uncharacterized protein
TrEMBL	A0A446XJ84	1e-180	A0A446XJ84_TRITD; Uncharacterized protein
STRING	MLOC_66924.2	1e-176	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	2e-91	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]