PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00063.1.g02700.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 836aa    MW: 89578.5 Da    PI: 5.9813
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00063.1.g02700.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.3e-2171126156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t++q++eLe++F+++++p+ ++r++L++ lgL+  qVk+WFqN+R+++k
  Zjn_sc00063.1.g02700.1.am.mk  71 KKRYHRHTQHQIQELEAFFKQCPHPDDKQRKQLSQDLGLEPLQVKFWFQNKRTQMK 126
                                   688999***********************************************999 PP
2START206.21.3e-642544791206
                                   HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG CS
                         START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke 70 
                                   ela +a++elv++a+++ep+Wv  +      e + ++e+ ++f+++ +      ++ea+r+s+vv+m++++lve l+d++ 
  Zjn_sc00063.1.g02700.1.am.mk 254 ELAVAAMEELVRMAQLGEPLWVPTVidgvatEALSEEEYARTFPRGMGpkspeLRSEASRESVVVIMNHVNLVEMLMDVN- 333
                                   57899**************************************99988********************************. PP

                                   CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-T CS
                         START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppess 140
                                   qW + +     +a+tlev s+g      galqlm+ae+q++splvp R+  fvRy++q+++g+w++vdvS+d  +      
  Zjn_sc00063.1.g02700.1.am.mk 334 QWWTLFStivsRASTLEVFSTGvagnynGALQLMSAEFQMPSPLVPtRENQFVRYCKQHTDGSWAVVDVSLDGLRGGG-GL 413
                                   88777777777******************************************************************9.8* PP

                                   TSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                         START 141 svvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                   s++R++++pSg++i++++ng+s+vtwvehv+ +++++h l+rslv+sg+a+ga++w a+lqrqce+
  Zjn_sc00063.1.g02700.1.am.mk 414 SGIRGRRRPSGCIIREMPNGYSRVTWVEHVEADDAMVHDLYRSLVSSGQAFGARRWSAALQRQCER 479
                                   ****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-2260112IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1961128IPR009057Homeodomain-like
PROSITE profilePS5007116.7368128IPR001356Homeobox domain
SMARTSM003898.2E-1969132IPR001356Homeobox domain
CDDcd000864.73E-1970129No hitNo description
PfamPF000461.9E-1871126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.605.5E-4113156IPR009057Homeodomain-like
PROSITE profilePS5084841.29245482IPR002913START domain
SuperFamilySSF559611.17E-31248481No hitNo description
CDDcd088752.02E-113249478No hitNo description
SMARTSM002343.5E-64254479IPR002913START domain
PfamPF018521.3E-54255479IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-5326460IPR023393START-like domain
SuperFamilySSF559615.06E-22505727No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MMLPGRNNMP TAAAAAMLGR NGSGLVYSPV TLGGQVNLII ASLCSIQPLD CSVGGELVEV  60
EEDLSLLPLR KKRYHRHTQH QIQELEAFFK QCPHPDDKQR KQLSQDLGLE PLQVKFWFQN  120
KRTQMKTQHE RQENSHLRAE NEKLRAENER YREALANATC PNCGGPATAV IGEMSFDEQH  180
LRLENARLRD EIDRISSIAA KYVGKPAGSL PSSNISSAAT GSLYPPPLSH HLPGLDVLAL  240
PHGAAGIDKP LVIELAVAAM EELVRMAQLG EPLWVPTVID GVATEALSEE EYARTFPRGM  300
GPKSPELRSE ASRESVVVIM NHVNLVEMLM DVNQWWTLFS TIVSRASTLE VFSTGVAGNY  360
NGALQLMSAE FQMPSPLVPT RENQFVRYCK QHTDGSWAVV DVSLDGLRGG GGLSGIRGRR  420
RPSGCIIREM PNGYSRVTWV EHVEADDAMV HDLYRSLVSS GQAFGARRWS AALQRQCERL  480
ASAMSSSVPA APAGGVAAGV VTSAEGRQSM LRLAERMVAS FCVGVTASTT HQWTTLSGSG  540
AEDVRVTTRK SVDDPGRPPG IILNAATSFW LPVPPARIFG FLRDDATRSE WDILSNGGDV  600
QEMAHIANGR DQGNAVSLLR VNNVNSNQSN MLILQECLTD ATGSYVIYAP VDVVAMNVVL  660
NGGDPDYVAL LPSGFAILPD GPGAGQGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIA  720
CTVERIKAAI AVDNKAGAAP PAEWPIGDQA EATRDESGEG SRLEAVETKP KFGRGFGNAG  780
ESRTHRRLAL RVVALDSEVA KGATPGNGVG SGIDSPLSSL LPSTCQALSG SSMECY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972909.10.0homeobox-leucine zipper protein ROC7
SwissprotA3BPF20.0ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLK3YGB10.0K3YGB1_SETIT; Uncharacterized protein
STRINGSi013279m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2