PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00060.1.g00240.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 353aa MW: 39058.3 Da PI: 10.19

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00060.1.g00240.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.4	9.5e-52	137	267	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhP+dee++++yL +kv ++++++ +i+e+di+++ePw+Lp+k+k +ekewyf++ +d+ky++g+r nrat+ g Zjn_sc00060.1.g00240.1.sm.mk 137 LPPGFRFHPSDEEIITFYLMPKVLNSNFTT-VAIAEADINNSEPWELPRKAKMGEKEWYFYCLKDHKYQKGERINRATNVG 216 79***********************999.67***********99999************************ PP NAM 82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatgkdke++++ ++vg+kktLvfy+grap+gekt+W+mheyrle Zjn_sc00060.1.g00240.1.sm.mk 217 FWKATGKDKEIYQAssmMPAVVGMKKTLVFYTGRAPRGEKTEWIMHEYRLE 267 *********84444445**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-54	134	274	IPR003441	NAC domain
PROSITE profile	PS51005	49.988	137	290	IPR003441	NAC domain
Pfam	PF02365	5.2E-26	138	266	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MFRRPRISGR HRGCFGAIAS LPNTSLFAAG PVTNTVGAPN SDSFDTGPYR SIRSRSHLSP 60 ALLRIARSMP RLCPITGRPS EPGGRFAGKG FLTAIGVSKA TRSATMTVAA IVVDWRSMGD 120 HKYEGIRGTI DDAGLNLPPG FRFHPSDEEI ITFYLMPKVL NSNFTTVAIA EADINNSEPW 180 ELPRKAKMGE KEWYFYCLKD HKYQKGERIN RATNVGFWKA TGKDKEIYQA SSMMPAVVGM 240 KKTLVFYTGR APRGEKTEWI MHEYRLEGSS KLGCPSTSSN ISKSCNPANF QQVDTDNIDG 300 SATNAVVSFR GISEVPRPRG ILSFTASKFH LSNQARSREN KQNHGYGTTC DYH

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MFRRPRISGR HRGCFGAIAS LPNTSLFAAG PVTNTVGAPN SDSFDTGPYR SIRSRSHLSP  60
ALLRIARSMP RLCPITGRPS EPGGRFAGKG FLTAIGVSKA TRSATMTVAA IVVDWRSMGD  120
HKYEGIRGTI DDAGLNLPPG FRFHPSDEEI ITFYLMPKVL NSNFTTVAIA EADINNSEPW  180
ELPRKAKMGE KEWYFYCLKD HKYQKGERIN RATNVGFWKA TGKDKEIYQA SSMMPAVVGM  240
KKTLVFYTGR APRGEKTEWI MHEYRLEGSS KLGCPSTSSN ISKSCNPANF QQVDTDNIDG  300
SATNAVVSFR GISEVPRPRG ILSFTASKFH LSNQARSREN KQNHGYGTTC DYH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	125	272	5	154	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	125	272	5	154	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	125	272	5	154	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	125	272	5	154	NO APICAL MERISTEM PROTEIN
4dul_A	2e-43	125	272	5	154	NAC domain-containing protein 19
4dul_B	2e-43	125	272	5	154	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35136	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29035.1	3e-66	NAC domain containing protein 3